Variant report

Variant	rs12808048
Chromosome Location	chr11:83888454-83888455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs11820047	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12785630	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12785867	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12787368	0.95[EUR][1000 genomes]
rs12788130	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12788766	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12789203	0.95[EUR][1000 genomes]
rs12789747	0.95[EUR][1000 genomes]
rs12789896	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12791194	0.93[EUR][1000 genomes]
rs12792995	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12793913	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12794331	0.95[EUR][1000 genomes]
rs12794445	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12794827	0.95[EUR][1000 genomes]
rs12799079	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12799887	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12799958	0.95[EUR][1000 genomes]
rs12800271	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12800335	0.95[EUR][1000 genomes]
rs12800591	0.93[EUR][1000 genomes]
rs12801228	0.87[CEU][hapmap];0.98[EUR][1000 genomes]
rs12801364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12807260	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12807782	0.90[EUR][1000 genomes]
rs12808232	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12808314	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12808441	0.95[EUR][1000 genomes]
rs12808867	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17146978	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17146992	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17561231	0.88[CEU][hapmap]
rs2168008	0.95[EUR][1000 genomes]
rs2187553	0.88[CEU][hapmap]
rs2187554	0.95[EUR][1000 genomes]
rs34041407	0.95[EUR][1000 genomes]
rs34042104	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34157997	0.98[EUR][1000 genomes]
rs34228643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34263119	0.95[EUR][1000 genomes]
rs34293665	0.98[EUR][1000 genomes]
rs34317629	0.95[EUR][1000 genomes]
rs34337231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34386657	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34450319	0.95[EUR][1000 genomes]
rs34455483	0.95[EUR][1000 genomes]
rs34490407	1.00[EUR][1000 genomes]
rs34664733	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34671961	0.95[EUR][1000 genomes]
rs34770791	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34805036	0.95[EUR][1000 genomes]
rs34818866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34948958	0.95[EUR][1000 genomes]
rs35045635	0.95[EUR][1000 genomes]
rs35046352	0.95[EUR][1000 genomes]
rs35132821	0.95[EUR][1000 genomes]
rs35193038	0.95[EUR][1000 genomes]
rs35286030	0.95[EUR][1000 genomes]
rs35391389	0.98[EUR][1000 genomes]
rs35409608	1.00[EUR][1000 genomes]
rs35502448	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35503301	0.95[EUR][1000 genomes]
rs35615041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35618512	0.95[EUR][1000 genomes]
rs35710671	0.95[EUR][1000 genomes]
rs35758479	0.95[EUR][1000 genomes]
rs35801171	0.98[EUR][1000 genomes]
rs35906479	0.95[EUR][1000 genomes]
rs35910823	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35916353	0.98[EUR][1000 genomes]
rs35924856	1.00[EUR][1000 genomes]
rs35932053	0.95[EUR][1000 genomes]
rs35969270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35992468	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36142496	0.93[EUR][1000 genomes]
rs36144059	0.85[EUR][1000 genomes]
rs36170215	0.93[EUR][1000 genomes]
rs36193332	0.93[EUR][1000 genomes]
rs36193948	0.83[EUR][1000 genomes]
rs57290534	0.95[EUR][1000 genomes]
rs58482751	0.95[EUR][1000 genomes]
rs58827106	0.95[EUR][1000 genomes]
rs66534956	0.95[EUR][1000 genomes]
rs66685745	1.00[EUR][1000 genomes]
rs67084495	0.95[EUR][1000 genomes]
rs67455162	1.00[EUR][1000 genomes]
rs67541540	1.00[EUR][1000 genomes]
rs67595444	0.95[EUR][1000 genomes]
rs67605482	1.00[EUR][1000 genomes]
rs67735822	0.95[EUR][1000 genomes]
rs7105603	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7115103	0.87[CEU][hapmap];0.98[EUR][1000 genomes]
rs71468362	1.00[EUR][1000 genomes]
rs71468363	1.00[EUR][1000 genomes]
rs71468364	0.95[EUR][1000 genomes]
rs71468370	0.89[EUR][1000 genomes]
rs71469624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71469625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71469626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71469627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71469628	0.98[EUR][1000 genomes]
rs71469629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71469630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71469631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71469632	0.98[EUR][1000 genomes]
rs71469634	0.85[EUR][1000 genomes]
rs71469640	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73515762	0.98[EUR][1000 genomes]
rs73515763	0.93[EUR][1000 genomes]
rs73517713	0.98[EUR][1000 genomes]
rs73517787	0.95[EUR][1000 genomes]
rs73517792	0.91[EUR][1000 genomes]
rs7933714	1.00[CEU][hapmap]
rs7941748	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83885000-83889000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83886200-83891000	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83887600-83888600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:83887600-83888800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:83887600-83890600	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83887800-83889800	Enhancers	Colon Smooth Muscle	Colon
7	chr11:83887800-83890800	Enhancers	Brain Substantia Nigra	brain
8	chr11:83887800-83891600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:83888200-83891200	Enhancers	Brain Angular Gyrus	brain
10	chr11:83888400-83889400	Weak transcription	Fetal Heart	heart

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