Variant report

Variant	rs12785867
Chromosome Location	chr11:83821870-83821871
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 201 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:196)

rs_ID	r²[population]
rs11820047	0.82[EUR][1000 genomes]
rs12785630	0.82[EUR][1000 genomes]
rs12786173	1.00[AFR][1000 genomes]
rs12786293	1.00[AFR][1000 genomes]
rs12786844	1.00[AFR][1000 genomes]
rs12787368	0.82[EUR][1000 genomes]
rs12787995	1.00[AFR][1000 genomes]
rs12788130	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12788766	0.86[EUR][1000 genomes]
rs12789072	1.00[AFR][1000 genomes]
rs12789203	0.82[EUR][1000 genomes]
rs12789666	1.00[AFR][1000 genomes]
rs12789747	0.82[EUR][1000 genomes]
rs12789896	0.86[EUR][1000 genomes]
rs12790276	1.00[AFR][1000 genomes]
rs12791934	1.00[AFR][1000 genomes]
rs12792083	1.00[AFR][1000 genomes]
rs12792995	0.82[EUR][1000 genomes]
rs12793913	0.82[EUR][1000 genomes]
rs12794134	1.00[AFR][1000 genomes]
rs12794213	1.00[AFR][1000 genomes]
rs12794331	0.82[EUR][1000 genomes]
rs12794445	0.82[EUR][1000 genomes]
rs12794827	0.82[EUR][1000 genomes]
rs12795168	1.00[AFR][1000 genomes]
rs12796172	1.00[AFR][1000 genomes]
rs12797177	1.00[AFR][1000 genomes]
rs12797793	1.00[AFR][1000 genomes]
rs12799079	0.82[EUR][1000 genomes]
rs12799748	1.00[AFR][1000 genomes]
rs12799887	0.82[EUR][1000 genomes]
rs12799958	0.82[EUR][1000 genomes]
rs12800271	0.82[EUR][1000 genomes]
rs12800335	0.82[EUR][1000 genomes]
rs12801228	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs12801364	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12802882	1.00[AFR][1000 genomes]
rs12804520	1.00[AFR][1000 genomes]
rs12805074	1.00[AFR][1000 genomes]
rs12805464	1.00[AFR][1000 genomes]
rs12805533	1.00[AFR][1000 genomes]
rs12805593	1.00[AFR][1000 genomes]
rs12805936	1.00[AFR][1000 genomes]
rs12806818	1.00[AFR][1000 genomes]
rs12807260	0.82[EUR][1000 genomes]
rs12807339	1.00[AFR][1000 genomes]
rs12807782	0.95[EUR][1000 genomes]
rs12808048	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12808113	1.00[AFR][1000 genomes]
rs12808131	1.00[AFR][1000 genomes]
rs12808232	0.86[EUR][1000 genomes]
rs12808314	0.88[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808441	0.82[EUR][1000 genomes]
rs12808867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12809044	1.00[AFR][1000 genomes]
rs17146978	0.86[EUR][1000 genomes]
rs17146992	0.86[EUR][1000 genomes]
rs17561231	0.88[CEU][hapmap];1.00[AFR][1000 genomes]
rs2168008	0.82[EUR][1000 genomes]
rs2187553	0.88[CEU][hapmap];1.00[AFR][1000 genomes]
rs2187554	0.82[EUR][1000 genomes]
rs2449598	1.00[AFR][1000 genomes]
rs34012933	1.00[AFR][1000 genomes]
rs34041407	0.82[EUR][1000 genomes]
rs34042104	0.82[EUR][1000 genomes]
rs34045362	1.00[AFR][1000 genomes]
rs34131208	1.00[AFR][1000 genomes]
rs34133101	1.00[AFR][1000 genomes]
rs34150725	1.00[AFR][1000 genomes]
rs34157997	0.88[EUR][1000 genomes]
rs34197413	1.00[AFR][1000 genomes]
rs34211389	1.00[AFR][1000 genomes]
rs34228643	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34263119	0.82[EUR][1000 genomes]
rs34279739	1.00[AFR][1000 genomes]
rs34281369	1.00[AFR][1000 genomes]
rs34293665	0.88[EUR][1000 genomes]
rs34302412	1.00[AFR][1000 genomes]
rs34309181	1.00[AFR][1000 genomes]
rs34317629	0.82[EUR][1000 genomes]
rs34337231	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34386657	0.83[EUR][1000 genomes]
rs34436974	1.00[AFR][1000 genomes]
rs34450319	0.82[EUR][1000 genomes]
rs34455483	0.82[EUR][1000 genomes]
rs34490407	0.86[EUR][1000 genomes]
rs34655432	1.00[AFR][1000 genomes]
rs34658258	1.00[AFR][1000 genomes]
rs34671961	0.82[EUR][1000 genomes]
rs34716185	1.00[AFR][1000 genomes]
rs34745106	1.00[AFR][1000 genomes]
rs34747709	1.00[AFR][1000 genomes]
rs34756786	1.00[AFR][1000 genomes]
rs34770791	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34805036	0.82[EUR][1000 genomes]
rs34818866	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34826061	1.00[AFR][1000 genomes]
rs34846175	1.00[AFR][1000 genomes]
rs34899787	1.00[AFR][1000 genomes]
rs34948958	0.82[EUR][1000 genomes]
rs34949067	1.00[AFR][1000 genomes]
rs35045635	0.82[EUR][1000 genomes]
rs35046352	0.82[EUR][1000 genomes]
rs35132821	0.82[EUR][1000 genomes]
rs35193038	0.82[EUR][1000 genomes]
rs35240755	1.00[AFR][1000 genomes]
rs35268360	1.00[AFR][1000 genomes]
rs35275366	1.00[AFR][1000 genomes]
rs35286030	0.82[EUR][1000 genomes]
rs35292700	1.00[AFR][1000 genomes]
rs35307147	1.00[AFR][1000 genomes]
rs35337045	1.00[AFR][1000 genomes]
rs35388672	1.00[AFR][1000 genomes]
rs35391389	0.88[EUR][1000 genomes]
rs35409608	0.86[EUR][1000 genomes]
rs35494684	1.00[AFR][1000 genomes]
rs35502448	0.82[EUR][1000 genomes]
rs35503301	0.82[EUR][1000 genomes]
rs35532485	1.00[AFR][1000 genomes]
rs35540097	1.00[AFR][1000 genomes]
rs35583535	1.00[AFR][1000 genomes]
rs35615041	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35618512	0.82[EUR][1000 genomes]
rs35629749	1.00[AFR][1000 genomes]
rs35693607	1.00[AFR][1000 genomes]
rs35704316	1.00[AFR][1000 genomes]
rs35710671	0.82[EUR][1000 genomes]
rs35728121	1.00[AFR][1000 genomes]
rs35758479	0.82[EUR][1000 genomes]
rs35801171	0.88[EUR][1000 genomes]
rs35804057	1.00[AFR][1000 genomes]
rs35906479	0.82[EUR][1000 genomes]
rs35910823	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35916353	0.88[EUR][1000 genomes]
rs35924856	0.86[EUR][1000 genomes]
rs35932053	0.82[EUR][1000 genomes]
rs35969270	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35990771	1.00[AFR][1000 genomes]
rs35992468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36034592	1.00[AFR][1000 genomes]
rs36165842	1.00[AFR][1000 genomes]
rs36189811	1.00[AFR][1000 genomes]
rs4133461	1.00[AFR][1000 genomes]
rs57290534	0.82[EUR][1000 genomes]
rs58482751	0.82[EUR][1000 genomes]
rs58827106	0.82[EUR][1000 genomes]
rs66534956	0.82[EUR][1000 genomes]
rs66685745	0.86[EUR][1000 genomes]
rs67084495	0.82[EUR][1000 genomes]
rs67455162	0.86[EUR][1000 genomes]
rs67541540	0.86[EUR][1000 genomes]
rs67595444	0.82[EUR][1000 genomes]
rs67605482	0.86[EUR][1000 genomes]
rs67735822	0.82[EUR][1000 genomes]
rs7105603	0.88[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115103	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs71465566	1.00[AFR][1000 genomes]
rs71465567	1.00[AFR][1000 genomes]
rs71465568	1.00[AFR][1000 genomes]
rs71465569	1.00[AFR][1000 genomes]
rs71465573	1.00[AFR][1000 genomes]
rs71465574	1.00[AFR][1000 genomes]
rs71465575	1.00[AFR][1000 genomes]
rs71465577	1.00[AFR][1000 genomes]
rs71465579	1.00[AFR][1000 genomes]
rs71465580	1.00[AFR][1000 genomes]
rs71465581	1.00[AFR][1000 genomes]
rs71465582	1.00[AFR][1000 genomes]
rs71465583	1.00[AFR][1000 genomes]
rs71468362	0.86[EUR][1000 genomes]
rs71468363	0.86[EUR][1000 genomes]
rs71468364	0.82[EUR][1000 genomes]
rs71469609	1.00[AFR][1000 genomes]
rs71469611	1.00[AFR][1000 genomes]
rs71469615	1.00[AFR][1000 genomes]
rs71469619	1.00[AFR][1000 genomes]
rs71469623	1.00[AFR][1000 genomes]
rs71469624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469625	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71469626	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71469627	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71469628	0.88[EUR][1000 genomes]
rs71469629	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71469630	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71469631	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71469632	0.88[EUR][1000 genomes]
rs73515762	0.88[EUR][1000 genomes]
rs73515763	0.84[EUR][1000 genomes]
rs73517713	0.88[EUR][1000 genomes]
rs73517787	0.82[EUR][1000 genomes]
rs7482523	1.00[AFR][1000 genomes]
rs7933714	0.82[CEU][hapmap]
rs7941748	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs963090	1.00[AFR][1000 genomes]
rs963091	1.00[AFR][1000 genomes]
rs963092	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83816600-83829200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links