Variant report

Variant	rs35540097
Chromosome Location	chr11:83682356-83682357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs12785867	1.00[AFR][1000 genomes]
rs12786173	1.00[AFR][1000 genomes]
rs12786293	1.00[AFR][1000 genomes]
rs12786844	1.00[AFR][1000 genomes]
rs12787995	1.00[AFR][1000 genomes]
rs12789072	1.00[AFR][1000 genomes]
rs12789666	1.00[AFR][1000 genomes]
rs12790276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12791934	1.00[AFR][1000 genomes]
rs12792083	1.00[AFR][1000 genomes]
rs12794134	1.00[AFR][1000 genomes]
rs12794213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12795168	1.00[AFR][1000 genomes]
rs12796172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12797177	1.00[AFR][1000 genomes]
rs12797793	1.00[AFR][1000 genomes]
rs12799748	1.00[AFR][1000 genomes]
rs12802882	1.00[AFR][1000 genomes]
rs12804520	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12804532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12804617	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12805074	1.00[AFR][1000 genomes]
rs12805402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805464	1.00[AFR][1000 genomes]
rs12805533	1.00[AFR][1000 genomes]
rs12805593	1.00[AFR][1000 genomes]
rs12805936	1.00[AFR][1000 genomes]
rs12806818	1.00[AFR][1000 genomes]
rs12807339	1.00[AFR][1000 genomes]
rs12808113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808867	1.00[AFR][1000 genomes]
rs12809044	1.00[AFR][1000 genomes]
rs17561231	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2187553	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2449598	1.00[AFR][1000 genomes]
rs34012933	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34045362	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34131208	1.00[AFR][1000 genomes]
rs34133101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34150725	1.00[AFR][1000 genomes]
rs34197413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34211389	1.00[AFR][1000 genomes]
rs34272592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34279739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34281369	1.00[AFR][1000 genomes]
rs34302412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34309181	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34310426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34436974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34655432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34658258	1.00[AFR][1000 genomes]
rs34716185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34745106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34747709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34756786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34826061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34846175	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34899787	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34912232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34949067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35024645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35214333	1.00[EUR][1000 genomes]
rs35239124	0.89[AMR][1000 genomes]
rs35240755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35268360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35275366	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35292700	1.00[AFR][1000 genomes]
rs35307147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35337045	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35388672	1.00[AFR][1000 genomes]
rs35494684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35532485	1.00[AFR][1000 genomes]
rs35583535	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35629749	1.00[AFR][1000 genomes]
rs35693607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35704316	1.00[AFR][1000 genomes]
rs35728121	1.00[AFR][1000 genomes]
rs35804057	1.00[AFR][1000 genomes]
rs35812794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35990771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36034592	1.00[AFR][1000 genomes]
rs36114419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36165842	1.00[AFR][1000 genomes]
rs36189811	1.00[AFR][1000 genomes]
rs4133461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465570	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465571	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465572	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71468355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71468356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71468359	0.89[AMR][1000 genomes]
rs71469609	1.00[AFR][1000 genomes]
rs71469611	1.00[AFR][1000 genomes]
rs71469615	1.00[AFR][1000 genomes]
rs71469619	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs71469623	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7482523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933714	0.89[AMR][1000 genomes]
rs963090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83678800-83682600	Enhancers	Brain Substantia Nigra	brain
2	chr11:83679200-83684000	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83679600-83684000	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83680600-83683000	Enhancers	Brain Angular Gyrus	brain
5	chr11:83681000-83684000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:83681000-83684000	Enhancers	Brain Anterior Caudate	brain
7	chr11:83681200-83682600	Enhancers	Fetal Brain Female	brain
8	chr11:83681200-83682800	Enhancers	Brain Germinal Matrix	brain
9	chr11:83681200-83683600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:83681200-83684000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:83681400-83682400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:83681400-83683200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:83681600-83682400	Enhancers	Fetal Brain Male	brain
14	chr11:83681600-83682800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:83681800-83682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:83681800-83683200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:83682000-83682400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr11:83682000-83682600	Enhancers	GM12878-XiMat	blood
19	chr11:83682000-83682800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:83682000-83682800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:83682200-83682600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:83682200-83683600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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