Variant report

Variant	rs7933714
Chromosome Location	chr11:83814235-83814236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11820047	1.00[CEU][hapmap]
rs12785630	1.00[CEU][hapmap]
rs12785867	0.82[CEU][hapmap]
rs12788130	1.00[CEU][hapmap]
rs12788766	1.00[CEU][hapmap]
rs12789896	1.00[CEU][hapmap]
rs12790276	0.89[AMR][1000 genomes]
rs12792995	1.00[CEU][hapmap]
rs12793913	1.00[CEU][hapmap]
rs12794213	0.89[AMR][1000 genomes]
rs12796172	0.89[AMR][1000 genomes]
rs12799079	1.00[CEU][hapmap]
rs12799887	1.00[CEU][hapmap]
rs12801228	1.00[CEU][hapmap]
rs12804532	0.89[AMR][1000 genomes]
rs12804617	0.89[AMR][1000 genomes]
rs12805402	0.89[AMR][1000 genomes]
rs12807260	1.00[CEU][hapmap]
rs12808048	1.00[CEU][hapmap]
rs12808113	0.89[AMR][1000 genomes]
rs12808131	0.89[AMR][1000 genomes]
rs12808232	1.00[CEU][hapmap]
rs12808314	1.00[CEU][hapmap]
rs12808867	1.00[CEU][hapmap]
rs17146978	1.00[CEU][hapmap]
rs17146992	1.00[CEU][hapmap]
rs17561231	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2187553	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34012933	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34045362	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34133101	0.89[AMR][1000 genomes]
rs34197413	0.89[AMR][1000 genomes]
rs34272592	0.89[AMR][1000 genomes]
rs34279739	0.89[AMR][1000 genomes]
rs34302412	0.89[AMR][1000 genomes]
rs34309181	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34310426	0.89[AMR][1000 genomes]
rs34436974	0.89[AMR][1000 genomes]
rs34655432	0.89[AMR][1000 genomes]
rs34716185	0.89[AMR][1000 genomes]
rs34745106	0.89[AMR][1000 genomes]
rs34747709	0.89[AMR][1000 genomes]
rs34756786	0.89[AMR][1000 genomes]
rs34826061	0.89[AMR][1000 genomes]
rs34846175	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34899787	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34912232	0.89[AMR][1000 genomes]
rs34949067	0.89[AMR][1000 genomes]
rs35024645	0.89[AMR][1000 genomes]
rs35239124	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35240755	0.89[AMR][1000 genomes]
rs35268360	0.89[AMR][1000 genomes]
rs35275366	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35307147	0.89[AMR][1000 genomes]
rs35494684	0.89[AMR][1000 genomes]
rs35540097	0.89[AMR][1000 genomes]
rs35693607	0.89[AMR][1000 genomes]
rs35812794	0.89[AMR][1000 genomes]
rs35990771	0.89[AMR][1000 genomes]
rs36114419	0.89[AMR][1000 genomes]
rs4133461	0.89[AMR][1000 genomes]
rs7105603	1.00[CEU][hapmap]
rs7115103	1.00[CEU][hapmap]
rs71465566	0.89[AMR][1000 genomes]
rs71465567	0.89[AMR][1000 genomes]
rs71465568	0.89[AMR][1000 genomes]
rs71465569	0.89[AMR][1000 genomes]
rs71465570	0.89[AMR][1000 genomes]
rs71465571	0.89[AMR][1000 genomes]
rs71465572	0.89[AMR][1000 genomes]
rs71465573	0.89[AMR][1000 genomes]
rs71465574	0.89[AMR][1000 genomes]
rs71465575	0.89[AMR][1000 genomes]
rs71465576	0.89[AMR][1000 genomes]
rs71465577	0.89[AMR][1000 genomes]
rs71465578	0.89[AMR][1000 genomes]
rs71465579	0.89[AMR][1000 genomes]
rs71465580	0.89[AMR][1000 genomes]
rs71465581	0.89[AMR][1000 genomes]
rs71465582	0.89[AMR][1000 genomes]
rs71465583	0.89[AMR][1000 genomes]
rs71468355	0.89[AMR][1000 genomes]
rs71468356	0.89[AMR][1000 genomes]
rs71468359	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71469619	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71469623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7482523	0.89[AMR][1000 genomes]
rs7941748	1.00[CEU][hapmap]
rs7950555	1.00[YRI][hapmap]
rs963090	0.89[AMR][1000 genomes]
rs963091	0.89[AMR][1000 genomes]
rs963092	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83811600-83814800	Enhancers	Brain Angular Gyrus	brain
2	chr11:83811600-83814800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:83812200-83814800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:83812200-83814800	Enhancers	Brain Anterior Caudate	brain
5	chr11:83812200-83814800	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83812200-83814800	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83812400-83814800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:83812600-83814600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:83812600-83814800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:83812600-83814800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:83812800-83814600	Enhancers	Brain Substantia Nigra	brain
12	chr11:83813000-83814600	Enhancers	HSMMtube	muscle
13	chr11:83813200-83814600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:83813600-83814600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:83813600-83814600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:83814000-83814400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:83814200-83814600	Flanking Active TSS	Brain Germinal Matrix	brain

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