Variant report

Variant	rs71465571
Chromosome Location	chr11:83683244-83683245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs12790276	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12794213	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12796172	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12804520	0.80[EUR][1000 genomes]
rs12804532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12804617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12808113	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12808131	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17561231	0.89[AMR][1000 genomes]
rs2187553	0.89[AMR][1000 genomes]
rs34012933	0.89[AMR][1000 genomes]
rs34045362	0.89[AMR][1000 genomes]
rs34133101	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34197413	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34272592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34279739	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34302412	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34309181	0.89[AMR][1000 genomes]
rs34310426	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34436974	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34655432	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34716185	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34745106	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34747709	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34756786	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34826061	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34846175	0.89[AMR][1000 genomes]
rs34899787	0.89[AMR][1000 genomes]
rs34912232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34949067	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35024645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35214333	0.98[EUR][1000 genomes]
rs35239124	0.89[AMR][1000 genomes]
rs35240755	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35268360	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35275366	0.89[AMR][1000 genomes]
rs35307147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35337045	0.80[EUR][1000 genomes]
rs35494684	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35540097	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35583535	0.80[EUR][1000 genomes]
rs35693607	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35812794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35990771	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36114419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4133461	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465566	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465567	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465568	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465569	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71465573	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465574	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465575	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465576	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465577	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465578	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465579	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465580	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465581	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465582	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71465583	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71468355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71468356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71468359	0.89[AMR][1000 genomes]
rs71469619	0.89[AMR][1000 genomes]
rs71469623	0.89[AMR][1000 genomes]
rs7482523	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7933714	0.89[AMR][1000 genomes]
rs963090	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs963091	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs963092	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83679200-83684000	Enhancers	Brain Cingulate Gyrus	brain
2	chr11:83679600-83684000	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83681000-83684000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:83681000-83684000	Enhancers	Brain Anterior Caudate	brain
5	chr11:83681200-83683600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:83681200-83684000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:83682200-83683600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:83682600-83683600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83682800-83687000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:83682800-83687200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:83683000-83683400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:83683200-83683600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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