Variant report

Variant	rs12789666
Chromosome Location	chr11:83728297-83728298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs12785867	1.00[AFR][1000 genomes]
rs12786173	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12786293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12786844	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12787995	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12789072	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12790276	1.00[AFR][1000 genomes]
rs12791771	1.00[CEU][hapmap]
rs12791934	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12792083	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12794134	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12794213	1.00[AFR][1000 genomes]
rs12795168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12796172	1.00[AFR][1000 genomes]
rs12797177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12797793	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12799748	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12800687	1.00[CEU][hapmap]
rs12802882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12804520	1.00[AFR][1000 genomes]
rs12805074	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805464	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805533	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805936	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12806818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12807339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808113	1.00[AFR][1000 genomes]
rs12808131	1.00[AFR][1000 genomes]
rs12808867	1.00[AFR][1000 genomes]
rs12809044	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17561231	1.00[AFR][1000 genomes]
rs2187553	1.00[AFR][1000 genomes]
rs2449598	1.00[AFR][1000 genomes]
rs34012933	1.00[AFR][1000 genomes]
rs34045362	1.00[AFR][1000 genomes]
rs34131208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34133101	1.00[AFR][1000 genomes]
rs34150725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34197413	1.00[AFR][1000 genomes]
rs34211389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34279739	1.00[AFR][1000 genomes]
rs34281369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34302412	1.00[AFR][1000 genomes]
rs34309181	1.00[AFR][1000 genomes]
rs34316246	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34413586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34436974	1.00[AFR][1000 genomes]
rs34655432	1.00[AFR][1000 genomes]
rs34658258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34716185	1.00[AFR][1000 genomes]
rs34745106	1.00[AFR][1000 genomes]
rs34747709	1.00[AFR][1000 genomes]
rs34756786	1.00[AFR][1000 genomes]
rs34826061	1.00[AFR][1000 genomes]
rs34846175	1.00[AFR][1000 genomes]
rs34899787	1.00[AFR][1000 genomes]
rs34949067	1.00[AFR][1000 genomes]
rs35240755	1.00[AFR][1000 genomes]
rs35268360	1.00[AFR][1000 genomes]
rs35275366	1.00[AFR][1000 genomes]
rs35292700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35307147	1.00[AFR][1000 genomes]
rs35337045	1.00[AFR][1000 genomes]
rs35388672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35494684	1.00[AFR][1000 genomes]
rs35532485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35540097	1.00[AFR][1000 genomes]
rs35583535	1.00[AFR][1000 genomes]
rs35629749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35693607	1.00[AFR][1000 genomes]
rs35704316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35728121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35804057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35918539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35990771	1.00[AFR][1000 genomes]
rs36034592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36165842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36189811	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4133461	1.00[AFR][1000 genomes]
rs7109170	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs71465566	1.00[AFR][1000 genomes]
rs71465567	1.00[AFR][1000 genomes]
rs71465568	1.00[AFR][1000 genomes]
rs71465569	1.00[AFR][1000 genomes]
rs71465573	1.00[AFR][1000 genomes]
rs71465574	1.00[AFR][1000 genomes]
rs71465575	1.00[AFR][1000 genomes]
rs71465577	1.00[AFR][1000 genomes]
rs71465579	1.00[AFR][1000 genomes]
rs71465580	1.00[AFR][1000 genomes]
rs71465581	1.00[AFR][1000 genomes]
rs71465582	1.00[AFR][1000 genomes]
rs71465583	1.00[AFR][1000 genomes]
rs71469609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469619	1.00[AFR][1000 genomes]
rs71469623	1.00[AFR][1000 genomes]
rs7482523	1.00[AFR][1000 genomes]
rs963090	1.00[AFR][1000 genomes]
rs963091	1.00[AFR][1000 genomes]
rs963092	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83723600-83731400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83723800-83730200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83723800-83730600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83723800-83730600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83724200-83731000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:83724400-83730200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:83728200-83733200	Enhancers	Brain Hippocampus Middle	brain

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