Variant report

Variant	rs34413586
Chromosome Location	chr11:83694722-83694723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12786173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12786293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12786844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12787995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12789072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12789666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12791934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12792083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12794134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12795168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12797177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12797793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12799748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12802882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12805936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12806818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12807339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12809044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34131208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34150725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34211389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34281369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34316246	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34658258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35292700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35388672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35532485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35629749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35704316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35728121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35804057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35918539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36034592	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36165842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36189811	1.00[EUR][1000 genomes]
rs7109170	0.89[EUR][1000 genomes]
rs71469609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83691600-83701200	Weak transcription	Brain Hippocampus Middle	brain

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