Variant report

Variant	rs73518936
Chromosome Location	chr9:110509892-110509893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110248851..110253829-chr9:110506998..110514501,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56357265	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56871349	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57325103	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58669480	1.00[ASN][1000 genomes]
rs58689856	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61096248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61150868	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73518928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518952	1.00[ASN][1000 genomes]
rs73518964	1.00[ASN][1000 genomes]
rs7849860	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
2	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
3	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:110501200-110510600	Weak transcription	Brain Anterior Caudate	brain
5	chr9:110502600-110511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:110503000-110510400	Weak transcription	Right Ventricle	heart
7	chr9:110503000-110510600	Weak transcription	Left Ventricle	heart
8	chr9:110503000-110510800	Weak transcription	Placenta	Placenta
9	chr9:110503000-110511400	Weak transcription	NHLF	lung
10	chr9:110504400-110512000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:110505200-110510600	Weak transcription	Adipose Nuclei	Adipose
12	chr9:110505200-110510800	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:110505200-110511400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:110505200-110514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:110507800-110513000	Weak transcription	GM12878-XiMat	blood
16	chr9:110509200-110511800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr9:110509200-110512400	Enhancers	Spleen	Spleen
18	chr9:110509400-110515600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:110509800-110510000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:110509800-110511000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:110509800-110511400	Weak transcription	Fetal Brain Male	brain
22	chr9:110509800-110511800	Weak transcription	HUVEC	blood vessel
23	chr9:110509800-110512000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:110509800-110512800	Enhancers	Ovary	ovary

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