Variant report

Variant	rs73519214
Chromosome Location	chr11:86791572-86791573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12576489	0.91[EUR][1000 genomes]
rs12577459	0.91[EUR][1000 genomes]
rs12577555	0.91[EUR][1000 genomes]
rs12577852	0.91[EUR][1000 genomes]
rs17149719	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149800	0.91[EUR][1000 genomes]
rs2374997	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4269948	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55929933	0.91[EUR][1000 genomes]
rs56087136	0.91[EUR][1000 genomes]
rs56859417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59876223	0.91[EUR][1000 genomes]
rs61464568	0.91[EUR][1000 genomes]
rs7103682	0.88[EUR][1000 genomes]
rs73517302	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73519223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73519237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73527070	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73527073	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9667641	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv1844274	chr11:86776992-86872908	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv468776	chr11:86788716-86826422	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv555706	chr11:86788716-86826422	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86769200-86792400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:86770400-86808200	Weak transcription	HUVEC	blood vessel
3	chr11:86773000-86792000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:86774600-86792400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:86774800-86806400	Weak transcription	Small Intestine	intestine
6	chr11:86776400-86792400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:86776600-86793000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:86776600-86815600	Weak transcription	HSMMtube	muscle
9	chr11:86777400-86792400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:86778400-86792400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:86778800-86791800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:86778800-86792400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:86779400-86792400	Weak transcription	GM12878-XiMat	blood
14	chr11:86779600-86792200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:86782600-86795400	Weak transcription	Fetal Heart	heart
16	chr11:86783000-86814000	Weak transcription	Hela-S3	cervix
17	chr11:86783200-86799000	Weak transcription	Psoas Muscle	Psoas
18	chr11:86784000-86792000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:86787200-86791800	Weak transcription	Colonic Mucosa	Colon
20	chr11:86787200-86794200	Weak transcription	Brain Anterior Caudate	brain
21	chr11:86787200-86795400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:86787400-86819600	Weak transcription	NH-A	brain
23	chr11:86787600-86791800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:86787600-86792000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:86787600-86804200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:86787600-86825200	Weak transcription	Brain Substantia Nigra	brain
27	chr11:86787800-86792400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:86787800-86792400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:86787800-86797200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:86787800-86797200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:86787800-86798200	Weak transcription	Spleen	Spleen
32	chr11:86787800-86804000	Weak transcription	Fetal Intestine Large	intestine
33	chr11:86787800-86817400	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:86787800-86819400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:86788000-86792400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:86788000-86792400	Weak transcription	Ovary	ovary
37	chr11:86788000-86792800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:86788000-86795400	Weak transcription	Lung	lung
39	chr11:86788000-86797200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:86788000-86797200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:86788000-86797200	Weak transcription	Esophagus	oesophagus
42	chr11:86788000-86797200	Weak transcription	Fetal Intestine Small	intestine
43	chr11:86788000-86797200	Weak transcription	Fetal Thymus	thymus
44	chr11:86788000-86797200	Weak transcription	Thymus	Thymus
45	chr11:86788000-86798400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:86788000-86800000	Weak transcription	Brain Germinal Matrix	brain
47	chr11:86788000-86800000	Weak transcription	Gastric	stomach
48	chr11:86788000-86803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:86788000-86803600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:86788000-86804200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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