Variant report

Variant	rs73519723
Chromosome Location	chr11:83922428-83922429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1531006	1.00[AFR][1000 genomes]
rs1598072	1.00[AMR][1000 genomes]
rs17146742	1.00[AMR][1000 genomes]
rs17146774	1.00[AMR][1000 genomes]
rs56845215	1.00[AMR][1000 genomes]
rs59497240	1.00[AMR][1000 genomes]
rs60264188	1.00[AMR][1000 genomes]
rs73513723	1.00[AMR][1000 genomes]
rs73513766	1.00[AMR][1000 genomes]
rs73513787	1.00[AMR][1000 genomes]
rs73515710	1.00[AMR][1000 genomes]
rs73515738	1.00[AMR][1000 genomes]
rs73515748	1.00[AMR][1000 genomes]
rs73515776	1.00[AMR][1000 genomes]
rs73515779	1.00[AMR][1000 genomes]
rs73515790	1.00[AMR][1000 genomes]
rs73517704	1.00[AMR][1000 genomes]
rs73517747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83920600-83923000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83921800-83923000	Enhancers	Brain Anterior Caudate	brain
3	chr11:83922200-83922800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83922200-83923000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:83922200-83923000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:83922400-83923000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:83922400-83923000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83922400-83923200	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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