Variant report

Variant	rs17146742
Chromosome Location	chr11:83783466-83783467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1598072	1.00[AMR][1000 genomes]
rs17146774	1.00[AMR][1000 genomes]
rs56845215	1.00[AMR][1000 genomes]
rs59497240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60264188	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508209	1.00[AMR][1000 genomes]
rs73508216	1.00[AMR][1000 genomes]
rs73508231	1.00[AMR][1000 genomes]
rs73508252	1.00[AMR][1000 genomes]
rs73513723	1.00[AMR][1000 genomes]
rs73513766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73513787	1.00[AMR][1000 genomes]
rs73515710	1.00[AMR][1000 genomes]
rs73515738	1.00[AMR][1000 genomes]
rs73515748	1.00[AMR][1000 genomes]
rs73515776	1.00[AMR][1000 genomes]
rs73515779	1.00[AMR][1000 genomes]
rs73515790	1.00[AMR][1000 genomes]
rs73517704	1.00[AMR][1000 genomes]
rs73517747	1.00[AMR][1000 genomes]
rs73519723	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83781000-83784200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83781200-83787400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83781400-83794400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83781800-83787200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83783200-83783600	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83783400-83784000	Enhancers	Brain Substantia Nigra	brain

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