Variant report

Variant	rs73520510
Chromosome Location	chr9:95156389-95156390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr9:95156283-95156483	MCF10A-Er-Src	breast:	n/a	n/a
2	FOSL2	chr9:95156117-95156658	SK-N-SH	brain:	n/a	n/a
3	FOS	chr9:95156272-95156543	MCF10A-Er-Src	breast:	n/a	n/a
4	NFIC	chr9:95155892-95156524	SK-N-SH	brain:	n/a	n/a
5	FOS	chr9:95156266-95156466	MCF10A-Er-Src	breast:	n/a	n/a
6	GATA3	chr9:95155831-95156557	SK-N-SH	brain:	n/a	n/a
7	GATA3	chr9:95155896-95156526	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
OGN	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16908298	1.00[AMR][1000 genomes]
rs16908313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1868027	1.00[AMR][1000 genomes]
rs35161698	0.87[AFR][1000 genomes]
rs57050708	0.85[AFR][1000 genomes]
rs57507064	1.00[AMR][1000 genomes]
rs57537991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57720908	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57829709	0.90[AFR][1000 genomes]
rs58545014	1.00[AMR][1000 genomes]
rs59203890	1.00[AMR][1000 genomes]
rs59274719	1.00[AMR][1000 genomes]
rs59491936	1.00[AMR][1000 genomes]
rs59541513	1.00[AMR][1000 genomes]
rs60502055	1.00[AMR][1000 genomes]
rs60556849	1.00[AMR][1000 genomes]
rs60863225	0.87[AFR][1000 genomes]
rs73516514	0.85[AFR][1000 genomes]
rs73516525	0.85[AFR][1000 genomes]
rs73516542	0.90[AFR][1000 genomes]
rs73516563	0.90[AFR][1000 genomes]
rs73516586	1.00[AMR][1000 genomes]
rs73516588	1.00[AMR][1000 genomes]
rs73516599	1.00[AMR][1000 genomes]
rs73518427	1.00[AMR][1000 genomes]
rs73518450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518479	0.81[AFR][1000 genomes]
rs73518492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520521	0.97[AFR][1000 genomes]
rs73520537	0.90[AFR][1000 genomes]
rs73520599	0.87[AFR][1000 genomes]
rs7853817	1.00[AMR][1000 genomes]
rs7868362	1.00[AMR][1000 genomes]
rs7875329	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95139000-95163200	Weak transcription	Aorta	Aorta
2	chr9:95142000-95159400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:95142200-95165600	Weak transcription	Fetal Thymus	thymus
4	chr9:95144200-95158800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:95145000-95163800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:95148000-95164000	Weak transcription	Adipose Nuclei	Adipose
7	chr9:95148400-95158800	Weak transcription	Ovary	ovary
8	chr9:95148400-95163800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:95154600-95158800	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:95155000-95158800	Weak transcription	Fetal Stomach	stomach
11	chr9:95155600-95156400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:95155600-95156400	Enhancers	Liver	Liver
13	chr9:95155600-95156400	Enhancers	Rectal Smooth Muscle	rectum
14	chr9:95155600-95166600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:95155800-95156400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:95155800-95156400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:95155800-95156400	Flanking Active TSS	NHDF-Ad	bronchial
18	chr9:95155800-95156400	Enhancers	Osteobl	bone
19	chr9:95156000-95156400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:95156000-95156400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr9:95156000-95156400	Enhancers	Brain Anterior Caudate	brain
22	chr9:95156000-95157800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr9:95156000-95159200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:95156200-95156400	Enhancers	Colon Smooth Muscle	Colon
25	chr9:95156200-95156400	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr9:95156200-95156400	Enhancers	Fetal Lung	lung
27	chr9:95156200-95168200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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