Variant report

Variant	rs35161698
Chromosome Location	chr9:95267938-95267939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95267270..95270140-chr9:95362878..95365869,2	MCF-7	breast:
2	chr9:95266639..95268183-chr9:95274225..95275863,2	K562	blood:
3	chr9:95267629..95269847-chr9:95430934..95432536,2	MCF-7	breast:
4	chr9:95266941..95269572-chr9:95384488..95386280,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16908313	0.83[AFR][1000 genomes]
rs57537991	0.83[AFR][1000 genomes]
rs57720908	0.83[AFR][1000 genomes]
rs57829709	0.83[AFR][1000 genomes]
rs59633583	1.00[AMR][1000 genomes]
rs60863225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035992	0.85[AMR][1000 genomes]
rs73516563	0.83[AFR][1000 genomes]
rs73518450	0.83[AFR][1000 genomes]
rs73518492	0.83[AFR][1000 genomes]
rs73520510	0.87[AFR][1000 genomes]
rs73520521	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73520537	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520539	0.85[AMR][1000 genomes]
rs73520554	1.00[AMR][1000 genomes]
rs73520599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:95252600-95269400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:95255000-95274600	Weak transcription	Liver	Liver
4	chr9:95255400-95269400	Weak transcription	Right Ventricle	heart
5	chr9:95258200-95268000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:95258600-95268200	Weak transcription	Fetal Heart	heart
7	chr9:95261400-95268200	Weak transcription	Brain Substantia Nigra	brain
8	chr9:95262200-95269800	Weak transcription	Fetal Thymus	thymus
9	chr9:95262200-95270000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:95262400-95268200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:95264200-95268200	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:95264400-95268200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:95264600-95268200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:95264600-95269000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:95264600-95270000	Weak transcription	Lung	lung
16	chr9:95264800-95270000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:95266000-95268600	Enhancers	Stomach Smooth Muscle	stomach
18	chr9:95266000-95270400	Enhancers	Colon Smooth Muscle	Colon
19	chr9:95266200-95268000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:95266200-95268200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:95266400-95268000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:95266400-95268200	Enhancers	NHLF	lung
23	chr9:95266400-95268400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr9:95266400-95269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:95266400-95270000	Enhancers	Osteobl	bone
26	chr9:95266600-95268000	Enhancers	HMEC	breast
27	chr9:95266600-95268200	Enhancers	NH-A	brain
28	chr9:95266600-95268200	Enhancers	NHDF-Ad	bronchial
29	chr9:95266600-95268600	Enhancers	Rectal Smooth Muscle	rectum
30	chr9:95266600-95269200	Enhancers	K562	blood
31	chr9:95266600-95270400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:95266600-95270800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:95266600-95271800	Enhancers	Fetal Muscle Leg	muscle
34	chr9:95266800-95268200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:95266800-95268200	Weak transcription	Ovary	ovary
36	chr9:95266800-95269000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:95266800-95269000	Weak transcription	Esophagus	oesophagus
38	chr9:95266800-95270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr9:95267000-95268000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:95267000-95268200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr9:95267000-95268200	Enhancers	Hela-S3	cervix
42	chr9:95267000-95268400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr9:95267000-95269000	Enhancers	Aorta	Aorta
44	chr9:95267000-95269800	Weak transcription	Left Ventricle	heart
45	chr9:95267000-95270000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:95267000-95271000	Enhancers	Fetal Stomach	stomach
47	chr9:95267200-95268200	Weak transcription	Fetal Lung	lung
48	chr9:95267200-95268200	Enhancers	HSMM	muscle
49	chr9:95267200-95269000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr9:95267200-95269200	Flanking Active TSS	NHEK	skin

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