Variant report

Variant	rs73520554
Chromosome Location	chr9:95220476-95220477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs15717	0.83[AFR][1000 genomes]
rs16908281	0.83[AFR][1000 genomes]
rs16908298	0.83[AFR][1000 genomes]
rs1868027	0.83[AFR][1000 genomes]
rs2236344	0.83[AFR][1000 genomes]
rs2274967	0.83[AFR][1000 genomes]
rs35161698	1.00[AMR][1000 genomes]
rs57507064	0.83[AFR][1000 genomes]
rs58545014	0.83[AFR][1000 genomes]
rs59203890	0.83[AFR][1000 genomes]
rs59274719	0.83[AFR][1000 genomes]
rs59491936	0.83[AFR][1000 genomes]
rs59541513	0.83[AFR][1000 genomes]
rs59633583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60502055	0.83[AFR][1000 genomes]
rs60556849	0.83[AFR][1000 genomes]
rs60863225	1.00[AMR][1000 genomes]
rs61217521	0.81[AFR][1000 genomes]
rs7035992	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73516586	0.81[AFR][1000 genomes]
rs73516588	0.81[AFR][1000 genomes]
rs73516599	0.83[AFR][1000 genomes]
rs73518427	0.83[AFR][1000 genomes]
rs73520521	0.83[AMR][1000 genomes]
rs73520537	1.00[AMR][1000 genomes]
rs73520539	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73520599	1.00[AMR][1000 genomes]
rs7853817	0.83[AFR][1000 genomes]
rs7868362	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95217000-95225000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:95218000-95220600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:95219000-95241600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:95219400-95221000	Weak transcription	Aorta	Aorta
5	chr9:95219800-95221400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:95220200-95225600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:95220200-95229400	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:95220200-95242400	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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