Variant report

Variant	rs73520635
Chromosome Location	chr6:72115016-72115017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr6:72113598-72115141	A549	lung:	n/a	n/a
2	FOSL2	chr6:72113763-72115042	A549	lung:	n/a	chr6:72114399-72114411 chr6:72114607-72114618 chr6:72114009-72114017
3	KAP1	chr6:72113042-72115941	HEK293	kidney:	n/a	n/a
4	FOXA1	chr6:72114406-72115040	ECC-1	luminal epithelium:	n/a	chr6:72114912-72114924
5	RCOR1	chr6:72113533-72115022	Hela-S3	cervix:	n/a	n/a
6	MAFK	chr6:72113245-72115510	Hela-S3	cervix:	n/a	chr6:72115311-72115322 chr6:72115306-72115321 chr6:72114402-72114411 chr6:72114976-72114987
7	TCF12	chr6:72113838-72115025	ECC-1	luminal epithelium:	n/a	chr6:72114912-72114921 chr6:72114307-72114316
8	EP300	chr6:72113572-72115320	A549	lung:	n/a	chr6:72114911-72114921 chr6:72113923-72113937 chr6:72113918-72113932
9	TEAD4	chr6:72113850-72115069	ECC-1	luminal epithelium:	n/a	n/a
10	EP300	chr6:72113674-72115091	A549	lung:	n/a	chr6:72114911-72114921 chr6:72113923-72113937 chr6:72113918-72113932
11	EP300	chr6:72113744-72115123	ECC-1	luminal epithelium:	n/a	chr6:72114911-72114921 chr6:72113923-72113937 chr6:72113918-72113932
12	CEBPB	chr6:72113233-72115494	Hela-S3	cervix:	n/a	chr6:72114236-72114247
13	TEAD4	chr6:72113742-72115155	A549	lung:	n/a	n/a
14	MAFK	chr6:72114919-72115371	H1-hESC	embryonic stem cell:	n/a	chr6:72115311-72115322 chr6:72115306-72115321 chr6:72114976-72114987
15	TEAD4	chr6:72113816-72115486	ECC-1	luminal epithelium:	n/a	n/a
16	TEAD4	chr6:72114301-72115031	A549	lung:	n/a	n/a
17	BRCA1	chr6:72113363-72115154	Hela-S3	cervix:	n/a	n/a
18	FOXM1	chr6:72113681-72115041	ECC-1	luminal epithelium:	n/a	n/a
19	NFIC	chr6:72113838-72115115	ECC-1	luminal epithelium:	n/a	n/a
20	REST	chr6:72113546-72115030	A549	lung:	n/a	n/a
21	NFIC	chr6:72113823-72115033	ECC-1	luminal epithelium:	n/a	n/a
22	POLR2A	chr6:72113722-72115115	PANC-1	pancreas:	n/a	n/a
23	TCF7L2	chr6:72113196-72115085	Hela-S3	cervix:	n/a	n/a
24	JUND	chr6:72113729-72115025	Hela-S3	cervix:	n/a	chr6:72114399-72114411 chr6:72114607-72114618 chr6:72114009-72114017
25	CEBPB	chr6:72113371-72115037	A549	lung:	n/a	chr6:72114236-72114247
26	TCF12	chr6:72112949-72115149	A549	lung:	n/a	chr6:72113200-72113209 chr6:72114912-72114921 chr6:72114307-72114316
27	SP1	chr6:72113687-72115016	A549	lung:	n/a	n/a
28	BCL3	chr6:72113889-72115115	A549	lung:	n/a	n/a
29	MAFK	chr6:72114936-72115435	IMR90	lung:	n/a	chr6:72115311-72115322 chr6:72115306-72115321 chr6:72114976-72114987
30	FOXA2	chr6:72114117-72115108	A549	lung:	n/a	chr6:72114912-72114924
31	GATA3	chr6:72113584-72115374	A549	lung:	n/a	chr6:72113883-72113890
32	SIX5	chr6:72114163-72115085	A549	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-6	chr6:72114951-72115034	NONHSAT113501

Variant related genes	Relation type
MIR30A	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6902972	1.00[ASN][1000 genomes]
rs6933839	1.00[ASN][1000 genomes]
rs7768778	1.00[ASN][1000 genomes]
rs7773239	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
3	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:72106000-72119600	Weak transcription	Lung	lung
5	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
8	chr6:72106600-72117200	Weak transcription	Gastric	stomach
9	chr6:72106600-72122000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:72106800-72117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:72106800-72119400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:72106800-72122000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
14	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
15	chr6:72107800-72118400	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:72107800-72125000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:72111800-72116000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:72112000-72115800	Enhancers	NHDF-Ad	bronchial
19	chr6:72112000-72117200	Weak transcription	Left Ventricle	heart
20	chr6:72112000-72117600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:72112400-72115400	Enhancers	Fetal Heart	heart
22	chr6:72112600-72115400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:72112800-72116000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:72112800-72116200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:72112800-72118200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:72113000-72115200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:72113000-72115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:72113000-72115600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:72113000-72115600	Enhancers	Liver	Liver
30	chr6:72113000-72117400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:72113200-72115200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:72113200-72115800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr6:72113200-72115800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:72113200-72116200	Enhancers	Psoas Muscle	Psoas
35	chr6:72113400-72115400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:72113400-72115400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:72113400-72115600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:72113400-72115600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr6:72113400-72116200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:72113400-72117200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:72113800-72115400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:72113800-72116200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr6:72114000-72115200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr6:72114000-72115200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:72114000-72119400	Weak transcription	Right Ventricle	heart
46	chr6:72114000-72124800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:72114200-72115200	Enhancers	NHEK	skin
48	chr6:72114200-72115400	Enhancers	Fetal Lung	lung
49	chr6:72114200-72115600	Enhancers	NHLF	lung
50	chr6:72114200-72115800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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