Variant report

Variant	rs6902972
Chromosome Location	chr6:72123014-72123015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1192040	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11964552	1.00[CHB][hapmap]
rs16880821	1.00[CHB][hapmap]
rs16881098	1.00[CHB][hapmap]
rs6933839	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73520635	1.00[ASN][1000 genomes]
rs7768778	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7773239	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
4	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
5	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:72107800-72125000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:72114000-72124800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:72114200-72125000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:72115400-72125200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:72116200-72128600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:72117600-72128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:72118200-72127800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:72118400-72123200	Genic enhancers	HUVEC	blood vessel
14	chr6:72119000-72125000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:72119800-72125200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:72120000-72129000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:72120200-72126600	Weak transcription	Fetal Intestine Small	intestine
18	chr6:72120200-72126600	Weak transcription	Lung	lung
19	chr6:72120400-72123400	ZNF genes & repeats	NHEK	skin
20	chr6:72121000-72124200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:72121400-72124800	Enhancers	Osteobl	bone
22	chr6:72121600-72123600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:72121800-72124200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:72121800-72124400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:72122000-72123200	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
26	chr6:72122000-72125200	Genic enhancers	HSMM	muscle
27	chr6:72122200-72123400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:72122200-72124200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:72122400-72123200	Enhancers	Adipose Nuclei	Adipose
30	chr6:72122400-72123200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr6:72122400-72123600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:72122400-72124400	Weak transcription	Placenta	Placenta
33	chr6:72122400-72127400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:72122400-72128800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:72122600-72123200	Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr6:72122600-72123400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:72122600-72124000	Weak transcription	Fetal Heart	heart
38	chr6:72122600-72124200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:72122600-72124200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:72122600-72124200	Weak transcription	Right Atrium	heart
41	chr6:72122600-72124200	Weak transcription	Stomach Mucosa	stomach
42	chr6:72122600-72124200	Weak transcription	NHDF-Ad	bronchial
43	chr6:72122600-72124400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:72122600-72124400	Weak transcription	NH-A	brain
45	chr6:72122600-72124600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:72122600-72124800	Weak transcription	Left Ventricle	heart
47	chr6:72122600-72124800	Weak transcription	Ovary	ovary
48	chr6:72122600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:72122600-72125000	Weak transcription	Aorta	Aorta
50	chr6:72122600-72125000	Weak transcription	Brain Substantia Nigra	brain

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