The 2.0 version of rSNPBase

Variant report

Variant rs16880821
Chromosome Location chr6:72011086-72011087
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:71999600-72012600 Weak transcription Colonic Mucosa Colon
2 chr6:71999800-72011200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:71999800-72015200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr6:71999800-72033800 Weak transcription Right Ventricle heart
5 chr6:72000000-72012800 Weak transcription Brain Germinal Matrix brain
6 chr6:72000000-72013200 Weak transcription Rectal Smooth Muscle rectum
7 chr6:72000000-72014200 Weak transcription Thymus Thymus
8 chr6:72000000-72015400 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr6:72000800-72017600 Weak transcription Fetal Heart heart
10 chr6:72001000-72012000 Weak transcription Colon Smooth Muscle Colon
11 chr6:72001000-72021600 Weak transcription Fetal Lung lung
12 chr6:72001000-72038800 Weak transcription Aorta Aorta
13 chr6:72001400-72014200 Weak transcription Fetal Intestine Small intestine
14 chr6:72001800-72013200 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr6:72001800-72020000 Weak transcription Fetal Brain Female brain
16 chr6:72002000-72013400 Weak transcription Placenta Amnion Placenta Amnion
17 chr6:72002000-72014600 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr6:72002000-72017600 Weak transcription Brain Cingulate Gyrus brain
19 chr6:72002000-72022000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr6:72002200-72011200 Weak transcription Fetal Brain Male brain
21 chr6:72002200-72011600 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr6:72002200-72015400 Weak transcription GM12878-XiMat blood
23 chr6:72003000-72011800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr6:72003200-72011600 Strong transcription Primary B cells from peripheral blood blood
25 chr6:72003200-72013200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr6:72003200-72014400 Strong transcription Primary B cells from cord blood blood
27 chr6:72003200-72016200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr6:72004000-72017000 Strong transcription Primary monocytes fromperipheralblood blood
29 chr6:72004200-72014400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr6:72004200-72018800 Weak transcription Brain Angular Gyrus brain
31 chr6:72004200-72021800 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr6:72004200-72030600 Weak transcription Lung lung
33 chr6:72004200-72041600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr6:72004400-72011400 Weak transcription Stomach Smooth Muscle stomach
35 chr6:72004400-72012600 Weak transcription Esophagus oesophagus
36 chr6:72004400-72012600 Weak transcription Gastric stomach
37 chr6:72004400-72012600 Weak transcription Spleen Spleen
38 chr6:72004400-72013800 Strong transcription Adipose Nuclei Adipose
39 chr6:72004400-72014200 Weak transcription Fetal Intestine Large intestine
40 chr6:72004400-72014200 Weak transcription Fetal Stomach stomach
41 chr6:72004400-72014800 Strong transcription Primary neutrophils fromperipheralblood blood
42 chr6:72004400-72016000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr6:72004400-72018000 Strong transcription Monocytes-CD14+_RO01746 blood
44 chr6:72004400-72019600 Weak transcription NH-A brain
45 chr6:72004400-72021600 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr6:72004400-72030800 Weak transcription Pancreas Pancrea
47 chr6:72004400-72043000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr6:72004600-72019200 Weak transcription Osteobl bone
49 chr6:72005000-72014200 Strong transcription HSMM muscle
50 chr6:72005600-72012400 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015