Variant report

Variant	rs16881098
Chromosome Location	chr6:72020596-72020597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72020589-72020673	ENSG00000232295.3

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1192040	1.00[CHB][hapmap]
rs11964552	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16880821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881111	0.83[EUR][1000 genomes]
rs20511	0.83[EUR][1000 genomes]
rs2273889	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36074955	1.00[ASN][1000 genomes]
rs60937390	1.00[ASN][1000 genomes]
rs61278898	1.00[ASN][1000 genomes]
rs61509217	1.00[ASN][1000 genomes]
rs7768778	1.00[CHB][hapmap]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72021600	Weak transcription	Fetal Lung	lung
3	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
4	chr6:72002000-72022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:72004200-72021800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:72004200-72030600	Weak transcription	Lung	lung
7	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:72004400-72021600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
10	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:72007000-72023000	Weak transcription	Liver	Liver
12	chr6:72009800-72025800	Weak transcription	Hela-S3	cervix
13	chr6:72010800-72022400	Weak transcription	NHEK	skin
14	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
15	chr6:72011600-72021600	Weak transcription	Psoas Muscle	Psoas
16	chr6:72011600-72022600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:72011800-72022600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:72011800-72022800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:72013200-72022400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:72013800-72022600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:72018000-72021600	Weak transcription	Fetal Heart	heart
24	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:72018000-72043200	Weak transcription	HSMM	muscle
27	chr6:72018400-72022000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:72018600-72030800	Weak transcription	Placenta	Placenta
29	chr6:72019200-72026400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:72019400-72022600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
32	chr6:72020400-72021600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:72020400-72021600	Weak transcription	Left Ventricle	heart

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