Variant report

Variant	rs73522724
Chromosome Location	chr9:95862267-95862268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95858505..95861349-chr9:95861790..95866603,4	K562	blood:
2	chr9:95855712..95863110-chr9:95867626..95874665,14	K562	blood:
3	chr9:95855662..95862507-chr9:95894736..95899302,16	MCF-7	breast:
4	chr9:95810158..95812137-chr9:95860234..95862505,2	K562	blood:
5	chr9:95816364..95826268-chr9:95852309..95863275,20	MCF-7	breast:
6	chr9:95765841..95768225-chr9:95860926..95862448,2	MCF-7	breast:
7	chr9:95856253..95862485-chr9:95892353..95899486,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157303	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000131669	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57330615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57649373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60691316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60982383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522721	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522749	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522765	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95859000-95862800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:95859000-95862800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:95859400-95862400	Enhancers	Primary B cells from peripheral blood	blood
4	chr9:95859400-95876200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:95859600-95862400	Enhancers	Placenta	Placenta
6	chr9:95859600-95862600	Enhancers	Ovary	ovary
7	chr9:95859600-95889400	Weak transcription	Fetal Kidney	kidney
8	chr9:95859800-95862400	Enhancers	Left Ventricle	heart
9	chr9:95859800-95862600	Enhancers	Esophagus	oesophagus
10	chr9:95860000-95862800	Enhancers	Fetal Thymus	thymus
11	chr9:95860000-95863000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:95860200-95872600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:95860400-95862400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:95860400-95862400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr9:95860400-95863000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:95860400-95876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:95860800-95863000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:95860800-95863000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr9:95860800-95872800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:95861000-95862400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:95861000-95862400	Weak transcription	Thymus	Thymus
22	chr9:95861000-95862400	Enhancers	HMEC	breast
23	chr9:95861000-95862400	Enhancers	NHDF-Ad	bronchial
24	chr9:95861000-95862600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:95861000-95862600	Enhancers	Primary B cells from cord blood	blood
26	chr9:95861000-95862600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr9:95861000-95862600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr9:95861000-95862600	Enhancers	Brain Substantia Nigra	brain
29	chr9:95861000-95863000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr9:95861000-95866000	Weak transcription	Fetal Brain Female	brain
31	chr9:95861000-95869800	Weak transcription	Aorta	Aorta
32	chr9:95861200-95862400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:95861200-95862400	Enhancers	Primary T cells from cord blood	blood
34	chr9:95861200-95862400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:95861200-95862400	Enhancers	GM12878-XiMat	blood
36	chr9:95861200-95862600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:95861200-95862800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr9:95861200-95862800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:95861200-95862800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr9:95861200-95863200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr9:95861400-95862600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:95861400-95862800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr9:95861600-95862400	Enhancers	Adipose Nuclei	Adipose
44	chr9:95861600-95862400	Enhancers	NHEK	skin
45	chr9:95861600-95862800	Strong transcription	Fetal Intestine Small	intestine
46	chr9:95861600-95865200	Weak transcription	Fetal Brain Male	brain
47	chr9:95861600-95872200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:95861800-95862400	Enhancers	Brain Germinal Matrix	brain
49	chr9:95861800-95862400	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr9:95861800-95862400	Enhancers	Stomach Smooth Muscle	stomach

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