Variant report

Variant	rs73522727
Chromosome Location	chr9:95863261-95863262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95858505..95861349-chr9:95861790..95866603,4	K562	blood:
2	chr9:95853194..95855867-chr9:95863177..95866078,2	MCF-7	breast:
3	chr9:95816364..95826268-chr9:95852309..95863275,20	MCF-7	breast:
4	chr9:95857780..95859947-chr9:95863150..95864826,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157303	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57330615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57649373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60691316	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60982383	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522721	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522730	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522749	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522765	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95859400-95876200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:95859600-95889400	Weak transcription	Fetal Kidney	kidney
3	chr9:95860200-95872600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:95860400-95876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:95860800-95872800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:95861000-95866000	Weak transcription	Fetal Brain Female	brain
7	chr9:95861000-95869800	Weak transcription	Aorta	Aorta
8	chr9:95861600-95865200	Weak transcription	Fetal Brain Male	brain
9	chr9:95861600-95872200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:95861800-95869800	Weak transcription	Fetal Intestine Large	intestine
11	chr9:95861800-95869800	Weak transcription	HepG2	liver
12	chr9:95861800-95882000	Weak transcription	HSMMtube	muscle
13	chr9:95862000-95864200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr9:95862000-95870600	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:95862000-95871200	Weak transcription	Hela-S3	cervix
16	chr9:95862000-95872800	Weak transcription	Osteobl	bone
17	chr9:95862000-95873800	Weak transcription	NH-A	brain
18	chr9:95862000-95878400	Weak transcription	Stomach Mucosa	stomach
19	chr9:95862000-95881800	Weak transcription	HUVEC	blood vessel
20	chr9:95862200-95863800	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:95862200-95864800	Weak transcription	A549	lung
22	chr9:95862200-95865400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:95862200-95866400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:95862200-95869400	Weak transcription	NHLF	lung
25	chr9:95862200-95869800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:95862200-95869800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:95862200-95869800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:95862200-95870000	Weak transcription	Right Ventricle	heart
29	chr9:95862200-95870800	Weak transcription	Pancreas	Pancrea
30	chr9:95862200-95870800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:95862200-95871600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:95862200-95878000	Weak transcription	HSMM	muscle
33	chr9:95862200-95878600	Weak transcription	Psoas Muscle	Psoas
34	chr9:95862200-95878600	Weak transcription	Right Atrium	heart
35	chr9:95862400-95863600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:95862400-95863800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:95862400-95863800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr9:95862400-95864200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:95862400-95864200	Weak transcription	HMEC	breast
40	chr9:95862400-95866000	Weak transcription	Primary T cells from cord blood	blood
41	chr9:95862400-95866000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:95862400-95866400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:95862400-95869000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr9:95862400-95869600	Weak transcription	Placenta	Placenta
45	chr9:95862400-95869600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:95862400-95869800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:95862400-95869800	Weak transcription	NHEK	skin
48	chr9:95862400-95870000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:95862400-95870000	Weak transcription	Adipose Nuclei	Adipose
50	chr9:95862400-95870000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links