Variant report

Variant	rs73524284
Chromosome Location	chr6:109558887-109558888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109556893..109560362-chr6:109702019..109704753,3	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109554938..109560362-chr6:109702019..109707132,8	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11968783	1.00[EUR][1000 genomes]
rs13362644	1.00[EUR][1000 genomes]
rs17070151	1.00[EUR][1000 genomes]
rs17070184	1.00[EUR][1000 genomes]
rs73518669	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526128	1.00[EUR][1000 genomes]
rs7452157	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480914	1.00[EUR][1000 genomes]
rs9487017	1.00[EUR][1000 genomes]
rs9487054	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109552200-109559000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:109556800-109562800	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:109556800-109564200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:109557000-109560600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:109557200-109559200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:109557200-109562000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:109557200-109565000	Enhancers	NHDF-Ad	bronchial
8	chr6:109557400-109559200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:109557400-109559400	Flanking Active TSS	K562	blood
10	chr6:109557400-109562000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:109557400-109562200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:109557600-109559400	Enhancers	Lung	lung
13	chr6:109557600-109559600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:109557600-109562000	Enhancers	Stomach Mucosa	stomach
15	chr6:109557600-109565200	Enhancers	Hela-S3	cervix
16	chr6:109557800-109559000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109557800-109559200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:109557800-109559400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:109557800-109559400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:109557800-109559400	Enhancers	Spleen	Spleen
21	chr6:109558000-109559000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr6:109558000-109559400	Enhancers	Primary T cells from cord blood	blood
23	chr6:109558000-109560000	Weak transcription	Right Atrium	heart
24	chr6:109558000-109560200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:109558000-109562000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:109558200-109559000	Enhancers	HSMM	muscle
27	chr6:109558200-109559400	Enhancers	HUVEC	blood vessel
28	chr6:109558200-109559800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:109558200-109560000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:109558200-109560400	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:109558200-109560400	Weak transcription	Fetal Intestine Large	intestine
32	chr6:109558200-109565000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:109558200-109565200	Enhancers	Osteobl	bone
34	chr6:109558200-109572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:109558400-109559200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:109558400-109559200	Enhancers	Fetal Thymus	thymus
37	chr6:109558400-109559400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr6:109558400-109560200	Weak transcription	HepG2	liver
39	chr6:109558400-109560400	Weak transcription	Fetal Intestine Small	intestine
40	chr6:109558400-109560400	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:109558400-109561400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:109558600-109559600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:109558600-109560000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:109558600-109561800	Weak transcription	HSMMtube	muscle
45	chr6:109558600-109562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:109558800-109559000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:109558800-109559000	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr6:109558800-109559400	Enhancers	Placenta	Placenta
49	chr6:109558800-109566400	Enhancers	Primary monocytes fromperipheralblood	blood

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