Variant report

Variant	rs7452157
Chromosome Location	chr6:109545592-109545593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11968783	1.00[EUR][1000 genomes]
rs13362644	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1521901	0.90[YRI][hapmap]
rs17070151	1.00[EUR][1000 genomes]
rs17070184	1.00[EUR][1000 genomes]
rs191611	0.84[AFR][1000 genomes]
rs380386	0.81[AMR][1000 genomes]
rs58963394	0.88[AFR][1000 genomes]
rs73518669	1.00[EUR][1000 genomes]
rs73524284	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526128	1.00[EUR][1000 genomes]
rs7744035	0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs7757073	0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs9480914	1.00[EUR][1000 genomes]
rs9487017	1.00[EUR][1000 genomes]
rs9487054	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109535200-109545800	Weak transcription	Right Atrium	heart
2	chr6:109536000-109550800	Weak transcription	HSMMtube	muscle
3	chr6:109542400-109547800	Weak transcription	Stomach Mucosa	stomach
4	chr6:109544200-109546800	Weak transcription	Aorta	Aorta
5	chr6:109544800-109547200	Enhancers	Psoas Muscle	Psoas
6	chr6:109545000-109546400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:109545000-109546600	Enhancers	Primary T cells from cord blood	blood
8	chr6:109545200-109545600	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr6:109545400-109545600	Enhancers	Spleen	Spleen
10	chr6:109545400-109546200	Enhancers	Fetal Thymus	thymus
11	chr6:109545400-109546200	Enhancers	Thymus	Thymus
12	chr6:109545400-109546600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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