Variant report

Variant	rs7757073
Chromosome Location	chr6:109518400-109518401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10457191	1.00[CEU][hapmap]
rs1521901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs191611	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap];0.97[ASN][1000 genomes]
rs352835	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs352857	0.95[ASN][1000 genomes]
rs58963394	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7452157	0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs7744035	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772788	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109516400-109535000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:109516800-109518400	Weak transcription	Pancreas	Pancrea
3	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
4	chr6:109517600-109518400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:109517600-109518600	Enhancers	HepG2	liver
6	chr6:109517800-109518400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:109517800-109518400	Enhancers	Fetal Intestine Large	intestine
8	chr6:109517800-109518600	Enhancers	Liver	Liver
9	chr6:109518000-109518400	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:109518000-109518600	Enhancers	Stomach Mucosa	stomach
11	chr6:109518200-109518400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:109518200-109518600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:109518200-109518600	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr6:109518400-109518600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr6:109518400-109520400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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