Variant report

Variant	rs73527959
Chromosome Location	chr9:97217651-97217652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97214734..97217712-chr9:97223589..97225379,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBP2-4	chr9:97217602-97218267	NONHSAT133315

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13299438	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2139188	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3926702	0.86[EUR][1000 genomes]
rs7021783	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73529931	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73529943	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653470	1.00[ASN][1000 genomes]
rs73653473	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653474	1.00[ASN][1000 genomes]
rs9409570	1.00[ASN][1000 genomes]
rs9409571	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv893593	chr9:97196979-97228918	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97176800-97218000	Weak transcription	Fetal Brain Female	brain
2	chr9:97192200-97221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:97195600-97218000	Weak transcription	Pancreas	Pancrea
4	chr9:97199400-97221400	Weak transcription	Psoas Muscle	Psoas
5	chr9:97201000-97223400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:97201000-97224600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr9:97201000-97225000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr9:97201000-97225800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:97201400-97221400	Weak transcription	Stomach Mucosa	stomach
10	chr9:97201400-97225200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr9:97201600-97224800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:97202000-97224200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:97202200-97225600	Strong transcription	Dnd41	blood
14	chr9:97202400-97222600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:97203200-97225000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:97204200-97222800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:97204400-97227000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:97206200-97225800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:97206600-97224400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:97206800-97225200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr9:97206800-97225600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:97207000-97225800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr9:97207200-97218000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:97207200-97224800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:97207400-97218000	Weak transcription	Esophagus	oesophagus
26	chr9:97208200-97224800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:97208400-97221400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:97208400-97222800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:97208400-97224600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:97208400-97225200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:97208600-97217800	Weak transcription	Fetal Heart	heart
32	chr9:97209000-97225000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr9:97209000-97225400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr9:97209200-97224200	Strong transcription	Liver	Liver
35	chr9:97209200-97225200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:97209200-97225600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr9:97209400-97220600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:97209400-97222400	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr9:97209600-97223600	Strong transcription	Fetal Thymus	thymus
40	chr9:97209600-97224400	Strong transcription	Osteobl	bone
41	chr9:97209600-97224800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr9:97209800-97225200	Strong transcription	Placenta	Placenta
43	chr9:97209800-97225600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:97210000-97225200	Strong transcription	Fetal Muscle Leg	muscle
45	chr9:97210400-97220800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr9:97211600-97224400	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr9:97212400-97218000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr9:97212400-97218000	Weak transcription	Colonic Mucosa	Colon
49	chr9:97212400-97218200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr9:97212400-97218600	Weak transcription	H9 Cell Line	embryonic stem cell

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