Variant report
| Variant | rs73653473 |
|---|---|
| Chromosome Location | chr9:97254440-97254441 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:19)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:19 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SPI1 | chr9:97254194-97254861 | GM12878 | blood: | n/a | n/a |
| 2 | RUNX3 | chr9:97254367-97254730 | GM12878 | blood: | n/a | n/a |
| 3 | BATF | chr9:97254388-97254700 | GM12878 | blood: | n/a | chr9:97254488-97254498 |
| 4 | ATF2 | chr9:97254373-97254805 | GM12878 | blood: | n/a | n/a |
| 5 | POU2F2 | chr9:97254370-97254913 | GM12891 | blood: | n/a | chr9:97254510-97254525 |
| 6 | JUND | chr9:97254366-97254636 | HepG2 | liver: | n/a | chr9:97254486-97254497 chr9:97254487-97254494 chr9:97254487-97254496 chr9:97254485-97254496 chr9:97254485-97254497 |
| 7 | BCLAF1 | chr9:97254424-97254735 | GM12878 | blood: | n/a | n/a |
| 8 | ZNF384 | chr9:97254428-97254827 | GM12878 | blood: | n/a | n/a |
| 9 | BATF | chr9:97254351-97254686 | GM12878 | blood: | n/a | chr9:97254488-97254498 |
| 10 | RUNX3 | chr9:97254361-97254807 | GM12878 | blood: | n/a | n/a |
| 11 | BCL11A | chr9:97254340-97254738 | GM12878 | blood: | n/a | n/a |
| 12 | SPI1 | chr9:97254323-97254843 | GM12891 | blood: | n/a | n/a |
| 13 | PAX5 | chr9:97254382-97254693 | GM12878 | blood: | n/a | n/a |
| 14 | FOS | chr9:97254435-97254563 | MCF10A-Er-Src | breast: | n/a | chr9:97254486-97254497 chr9:97254487-97254494 chr9:97254487-97254496 chr9:97254485-97254497 |
| 15 | SPI1 | chr9:97254366-97254733 | GM12891 | blood: | n/a | n/a |
| 16 | POU2F2 | chr9:97254364-97254731 | GM12878 | blood: | n/a | chr9:97254510-97254525 |
| 17 | SPI1 | chr9:97254415-97254771 | GM12878 | blood: | n/a | n/a |
| 18 | PAX5 | chr9:97254411-97254878 | GM12878 | blood: | n/a | n/a |
| 19 | BCL11A | chr9:97254407-97254725 | GM12878 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:97242816..97244907-chr9:97253508..97257110,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224245 | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs13299438 | 1.00[ASN][1000 genomes] |
| rs2139188 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3926702 | 0.88[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7021783 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73527959 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73529931 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73529943 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73653470 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73653474 | 1.00[ASN][1000 genomes] |
| rs9409570 | 1.00[ASN][1000 genomes] |
| rs9409571 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893592 | chr9:96973995-97295269 | Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2761545 | chr9:97025298-97356950 | Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041195 | chr9:97054795-97402378 | Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv1840205 | chr9:97202200-97366400 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv893594 | chr9:97221463-97283226 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv972423 | chr9:97243765-97254596 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv614916 | chr9:97245822-97273659 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 8 | nsv969694 | chr9:97250110-97254596 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:97241800-97262800 | Weak transcription | Liver | Liver |
| 2 | chr9:97254000-97255400 | Enhancers | GM12878-XiMat | blood |
