Variant report

Variant	rs73529874
Chromosome Location	chr11:71677451-71677452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71654518..71657892-chr11:71675208..71678197,3	MCF-7	breast:
2	chr11:71676803..71679636-chr11:71686579..71688460,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73529832	1.00[AFR][1000 genomes]
rs73529869	0.89[AFR][1000 genomes]
rs73529872	1.00[AFR][1000 genomes]
rs73531941	1.00[AFR][1000 genomes]
rs73531963	0.88[AFR][1000 genomes]
rs73531984	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71658800-71677800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:71660400-71701200	Weak transcription	Gastric	stomach
3	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
4	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
5	chr11:71661400-71687600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:71663000-71689400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:71663000-71698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:71665800-71683400	Weak transcription	Psoas Muscle	Psoas
9	chr11:71666000-71694200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:71668800-71699000	Weak transcription	Right Ventricle	heart
11	chr11:71669800-71694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:71670200-71686800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:71670600-71701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:71671000-71677600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:71672200-71679200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:71672200-71688600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:71672200-71698800	Weak transcription	NHEK	skin
18	chr11:71672200-71701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
20	chr11:71672400-71682800	Weak transcription	HSMMtube	muscle
21	chr11:71672400-71701000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:71672400-71709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:71672600-71680800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:71672600-71689400	Weak transcription	Brain Substantia Nigra	brain
25	chr11:71672600-71694400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:71672600-71694400	Weak transcription	Aorta	Aorta
27	chr11:71672600-71694600	Weak transcription	Esophagus	oesophagus
28	chr11:71672600-71698400	Weak transcription	Spleen	Spleen
29	chr11:71672600-71709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:71672800-71694600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:71673000-71679200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:71673000-71680800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:71673000-71683600	Weak transcription	Thymus	Thymus
34	chr11:71673000-71685800	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:71673000-71685800	Weak transcription	Left Ventricle	heart
36	chr11:71673000-71697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr11:71673000-71698800	Weak transcription	Ovary	ovary
38	chr11:71673000-71701200	Weak transcription	Pancreas	Pancrea
39	chr11:71673200-71680600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:71673200-71694800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:71673600-71679200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:71673600-71680600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:71673600-71680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:71673600-71694400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:71673600-71698800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:71673600-71710800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:71673800-71678600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:71673800-71678600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:71673800-71678800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:71673800-71679000	Weak transcription	Fetal Thymus	thymus

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