Variant report

Variant	rs73531963
Chromosome Location	chr11:71698244-71698245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71696643..71698574-chr11:71700345..71702510,2	MCF-7	breast:
2	chr11:71691335..71693664-chr11:71697035..71699782,2	K562	blood:
3	chr11:71697956..71700871-chr11:71714461..71717199,2	K562	blood:
4	chr11:71697459..71698980-chr11:71703170..71705876,2	MCF-7	breast:
5	chr11:71691090..71694167-chr11:71697035..71699782,4	K562	blood:
6	chr11:71697764..71701734-chr11:71709380..71711221,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137496	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs36029905	0.88[AFR][1000 genomes]
rs57438678	0.88[AFR][1000 genomes]
rs57956403	0.88[AFR][1000 genomes]
rs60163837	0.88[AFR][1000 genomes]
rs73529832	0.88[AFR][1000 genomes]
rs73529872	0.88[AFR][1000 genomes]
rs73529874	0.88[AFR][1000 genomes]
rs73531941	0.88[AFR][1000 genomes]
rs73531984	1.00[AFR][1000 genomes]
rs73533756	0.88[AFR][1000 genomes]
rs73533798	0.88[AFR][1000 genomes]
rs73537523	0.88[AFR][1000 genomes]
rs73539517	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71660400-71701200	Weak transcription	Gastric	stomach
2	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
3	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
4	chr11:71668800-71699000	Weak transcription	Right Ventricle	heart
5	chr11:71670600-71701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:71672200-71698800	Weak transcription	NHEK	skin
7	chr11:71672200-71701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
9	chr11:71672400-71701000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:71672400-71709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:71672600-71698400	Weak transcription	Spleen	Spleen
12	chr11:71672600-71709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:71673000-71698800	Weak transcription	Ovary	ovary
14	chr11:71673000-71701200	Weak transcription	Pancreas	Pancrea
15	chr11:71673600-71698800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:71673600-71710800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:71673800-71698400	Weak transcription	NHLF	lung
18	chr11:71673800-71701200	Weak transcription	Colonic Mucosa	Colon
19	chr11:71673800-71701800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:71673800-71707800	Weak transcription	Fetal Heart	heart
21	chr11:71674000-71710600	Weak transcription	Brain Germinal Matrix	brain
22	chr11:71675000-71701200	Weak transcription	Fetal Brain Female	brain
23	chr11:71677000-71709400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:71677200-71736600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:71678000-71710600	Weak transcription	HMEC	breast
26	chr11:71681200-71709400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:71681600-71698600	Weak transcription	Placenta	Placenta
28	chr11:71681600-71698800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:71684200-71709000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:71685800-71698600	Strong transcription	K562	blood
31	chr11:71687000-71698400	Weak transcription	NHDF-Ad	bronchial
32	chr11:71687800-71703000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:71688600-71703200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:71689000-71701200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:71689000-71711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:71689600-71702400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:71690200-71699600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:71691400-71701600	Weak transcription	Brain Angular Gyrus	brain
39	chr11:71691400-71701600	Weak transcription	Brain Anterior Caudate	brain
40	chr11:71691400-71705800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:71691800-71701000	Weak transcription	Brain Substantia Nigra	brain
42	chr11:71692600-71699400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:71693000-71699400	Strong transcription	HUVEC	blood vessel
44	chr11:71693200-71699600	Strong transcription	Primary T cells from cord blood	blood
45	chr11:71693400-71699200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr11:71693400-71699600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr11:71693400-71702200	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:71693600-71699200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:71693600-71699400	Strong transcription	Fetal Intestine Large	intestine
50	chr11:71694000-71700200	Strong transcription	Liver	Liver

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