Variant report

Variant	rs73539517
Chromosome Location	chr11:71808146-71808147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs36029905	1.00[AFR][1000 genomes]
rs57438678	1.00[AFR][1000 genomes]
rs57920810	0.84[AFR][1000 genomes]
rs57956403	1.00[AFR][1000 genomes]
rs60163837	1.00[AFR][1000 genomes]
rs73531963	0.88[AFR][1000 genomes]
rs73531984	0.88[AFR][1000 genomes]
rs73533756	1.00[AFR][1000 genomes]
rs73533759	0.89[AFR][1000 genomes]
rs73533760	0.84[AFR][1000 genomes]
rs73533784	0.84[AFR][1000 genomes]
rs73533798	1.00[AFR][1000 genomes]
rs73537512	0.84[AFR][1000 genomes]
rs73537523	1.00[AFR][1000 genomes]
rs73543608	0.89[AFR][1000 genomes]
rs73543620	0.89[AFR][1000 genomes]
rs73543646	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71792600-71808800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:71792600-71809000	Weak transcription	Psoas Muscle	Psoas
3	chr11:71792600-71812800	Weak transcription	Fetal Heart	heart
4	chr11:71792600-71813200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:71792800-71808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:71792800-71808200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:71793000-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:71793200-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:71798000-71812200	Weak transcription	Fetal Brain Male	brain
10	chr11:71800400-71812000	Strong transcription	Primary T cells from cord blood	blood
11	chr11:71802800-71808200	Weak transcription	HepG2	liver
12	chr11:71802800-71809200	Weak transcription	HUVEC	blood vessel
13	chr11:71802800-71810000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:71803000-71810800	Strong transcription	Fetal Muscle Leg	muscle
15	chr11:71803600-71808400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:71803600-71810200	Strong transcription	Stomach Smooth Muscle	stomach
17	chr11:71803800-71809400	Strong transcription	Placenta	Placenta
18	chr11:71803800-71809800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:71803800-71810800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr11:71803800-71811200	Strong transcription	Brain Angular Gyrus	brain
21	chr11:71804000-71812800	Strong transcription	Fetal Stomach	stomach
22	chr11:71804200-71810000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:71804200-71810200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr11:71804200-71810400	Strong transcription	Adipose Nuclei	Adipose
25	chr11:71804200-71810400	Strong transcription	Brain Hippocampus Middle	brain
26	chr11:71804200-71810600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:71804200-71811200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:71804200-71811600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:71804200-71811600	Strong transcription	Gastric	stomach
30	chr11:71804200-71811800	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr11:71804200-71812200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:71804200-71812200	Strong transcription	Fetal Intestine Large	intestine
33	chr11:71804400-71808800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:71804400-71809600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:71804400-71810400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:71804400-71810400	Strong transcription	Fetal Thymus	thymus
37	chr11:71804400-71810600	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr11:71804400-71810600	Strong transcription	Liver	Liver
39	chr11:71804400-71811000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr11:71804400-71811000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr11:71804400-71811200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:71804400-71811200	Strong transcription	Fetal Intestine Small	intestine
43	chr11:71804400-71811200	Strong transcription	Osteobl	bone
44	chr11:71804400-71811400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:71804400-71811400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:71804400-71811800	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:71804400-71811800	Strong transcription	NHLF	lung
48	chr11:71804400-71812800	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:71804400-71812800	Strong transcription	A549	lung
50	chr11:71804600-71810000	Strong transcription	Primary monocytes fromperipheralblood	blood

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