Variant report

Variant	rs73534211
Chromosome Location	chr16:30444445-30444446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30443803..30445517-chr16:30541072..30542822,2	MCF-7	breast:
2	chr16:30441006..30444833-chr16:30580955..30584682,5	MCF-7	breast:
3	chr16:30440123..30443030-chr16:30444445..30449448,5	MCF-7	breast:
4	chr16:30443816..30445444-chr16:30445779..30448328,2	K562	blood:
5	chr16:30443412..30445313-chr16:30637983..30640919,2	K562	blood:
6	chr16:30439638..30442506-chr16:30442985..30446436,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179958	Chromatin interaction
ENSG00000229809	Chromatin interaction
ENSG00000239791	Chromatin interaction
ENSG00000260113	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11574943	0.83[AMR][1000 genomes]
rs17839542	0.85[AMR][1000 genomes]
rs73534219	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065915	chr16:29967090-30486120	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
2	nsv542897	chr16:29967090-30486120	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
3	nsv1056897	chr16:30363683-30457504	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
5	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
6	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30442200-30445000	Weak transcription	Psoas Muscle	Psoas
2	chr16:30442200-30445200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr16:30442200-30445200	Weak transcription	Thymus	Thymus
4	chr16:30442200-30445600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:30442200-30446000	Weak transcription	HMEC	breast
6	chr16:30442200-30446000	Weak transcription	NHEK	skin
7	chr16:30442200-30446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:30442200-30451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:30442200-30454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr16:30442200-30454400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr16:30442200-30454400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:30442200-30454600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr16:30442200-30455000	Weak transcription	Spleen	Spleen
14	chr16:30442200-30455600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:30442200-30456000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:30442400-30445000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr16:30442400-30445200	Weak transcription	Fetal Thymus	thymus
18	chr16:30442400-30445200	Weak transcription	GM12878-XiMat	blood
19	chr16:30442400-30445400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr16:30442400-30445400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr16:30442400-30445400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr16:30442400-30446200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:30442400-30453400	Weak transcription	Fetal Intestine Small	intestine
24	chr16:30442400-30453800	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:30442400-30454400	Weak transcription	Primary T cells from cord blood	blood
26	chr16:30442400-30454400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr16:30442400-30454400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr16:30442400-30454400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:30442400-30454400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr16:30442400-30454400	Weak transcription	K562	blood
31	chr16:30442400-30454800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr16:30442400-30454800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr16:30442400-30455000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr16:30442600-30446000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr16:30442800-30445400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr16:30442800-30454400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr16:30443000-30445800	Weak transcription	Primary T cells fromperipheralblood	blood

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