Variant report

Variant	rs73534219
Chromosome Location	chr16:30463779-30463780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30455018..30459369-chr16:30459448..30468813,19	MCF-7	breast:
2	chr16:30462093..30464895-chr16:30468184..30472566,3	K562	blood:
3	chr16:30462000..30465097-chr16:30539143..30541421,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179918	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17839542	1.00[ASN][1000 genomes]
rs35864805	1.00[ASN][1000 genomes]
rs7198640	1.00[ASN][1000 genomes]
rs73534211	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065915	chr16:29967090-30486120	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
2	nsv542897	chr16:29967090-30486120	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
3	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
4	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
5	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
6	nsv1783	chr16:30449450-30494321	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30457600-30465600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:30457600-30466800	Enhancers	Fetal Intestine Small	intestine
3	chr16:30457800-30463800	Weak transcription	K562	blood
4	chr16:30457800-30465400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:30458000-30463800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:30458000-30464400	Weak transcription	Small Intestine	intestine
7	chr16:30459000-30472600	Weak transcription	Gastric	stomach
8	chr16:30459200-30467200	Weak transcription	A549	lung
9	chr16:30460400-30466600	Enhancers	Fetal Thymus	thymus
10	chr16:30460800-30464400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr16:30460800-30464800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr16:30460800-30465800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:30461000-30463800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr16:30461000-30464200	Enhancers	Primary B cells from cord blood	blood
15	chr16:30461200-30464400	Enhancers	Primary B cells from peripheral blood	blood
16	chr16:30462200-30469000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr16:30462400-30464000	Weak transcription	Colonic Mucosa	Colon
18	chr16:30462400-30465000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr16:30462400-30470200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr16:30462600-30463800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr16:30462600-30465600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr16:30462600-30467600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr16:30462600-30467600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr16:30462600-30469200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr16:30462800-30467600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr16:30463200-30463800	Enhancers	HepG2	liver
27	chr16:30463200-30464200	Enhancers	GM12878-XiMat	blood
28	chr16:30463400-30464800	Enhancers	Primary hematopoietic stem cells	blood
29	chr16:30463400-30466800	Enhancers	Fetal Intestine Large	intestine
30	chr16:30463400-30467000	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr16:30463400-30468000	Weak transcription	Thymus	Thymus
32	chr16:30463600-30464000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr16:30463600-30464200	Enhancers	Primary T cells from cord blood	blood
34	chr16:30463600-30464200	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr16:30463600-30464200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr16:30463600-30464200	Enhancers	Duodenum Mucosa	Duodenum
37	chr16:30463600-30464400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr16:30463600-30464800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr16:30463600-30465800	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr16:30463600-30466600	Enhancers	Stomach Mucosa	stomach

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