Variant report

Variant	rs73535750
Chromosome Location	chr15:92832524-92832525
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1479518	1.00[AMR][1000 genomes]
rs58083650	1.00[EUR][1000 genomes]
rs58403529	1.00[EUR][1000 genomes]
rs59440053	1.00[EUR][1000 genomes]
rs59599997	1.00[EUR][1000 genomes]
rs6496919	1.00[EUR][1000 genomes]
rs73535769	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544531	1.00[AMR][1000 genomes]
rs73544536	1.00[AMR][1000 genomes]
rs73544546	1.00[AMR][1000 genomes]
rs73544550	1.00[AMR][1000 genomes]
rs73546337	0.82[AFR][1000 genomes]
rs73548238	1.00[AMR][1000 genomes]
rs73548239	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92832000-92832600	Enhancers	GM12878-XiMat	blood
2	chr15:92832200-92833400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:92832400-92832600	Enhancers	Gastric	stomach
4	chr15:92832400-92832600	Enhancers	Left Ventricle	heart
5	chr15:92832400-92833200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:92832400-92834000	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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