Variant report

Variant	rs73544531
Chromosome Location	chr15:92716786-92716787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1479518	1.00[AMR][1000 genomes]
rs73535750	1.00[AMR][1000 genomes]
rs73535769	1.00[AMR][1000 genomes]
rs73544536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544550	1.00[AMR][1000 genomes]
rs73548238	1.00[AMR][1000 genomes]
rs73548239	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:92708200-92719000	Weak transcription	Lung	lung
4	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
5	chr15:92713000-92717400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:92716400-92717000	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links