Variant report

Variant	rs73537011
Chromosome Location	chr9:116056503-116056504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116053533..116057735-chr9:116058068..116062323,4	K562	blood:
2	chr9:116037887..116040476-chr9:116055081..116056645,2	K562	blood:
3	chr9:116037155..116039371-chr9:116054737..116056807,2	MCF-7	breast:
4	chr9:116036914..116039387-chr9:116053973..116056581,2	K562	blood:
5	chr9:116056474..116058317-chr9:116067548..116069839,2	K562	blood:
6	chr9:116054929..116058723-chr9:116059143..116063371,5	MCF-7	breast:
7	chr9:116054553..116056753-chr9:116171016..116173087,2	MCF-7	breast:
8	chr9:116053475..116056879-chr9:116057829..116061617,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000176386	Chromatin interaction
ENSG00000136875	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000157653	Chromatin interaction
ENSG00000165188	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12352784	0.88[AFR][1000 genomes]
rs12352925	0.80[AFR][1000 genomes]
rs2233915	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28733164	0.80[AFR][1000 genomes]
rs73537095	1.00[AMR][1000 genomes]
rs73550250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116038800-116060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116039000-116056800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:116039000-116058200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:116039400-116056600	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:116039400-116056600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:116039400-116056600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr9:116039400-116056600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:116039400-116056600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:116039400-116056600	Strong transcription	Placenta	Placenta
10	chr9:116039400-116056600	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:116039400-116056600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr9:116039400-116056800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:116039400-116056800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:116039600-116056600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:116039600-116056800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr9:116039600-116056800	Strong transcription	Fetal Stomach	stomach
17	chr9:116040000-116056800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr9:116040400-116056600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:116040400-116056800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:116040400-116056800	Strong transcription	Fetal Thymus	thymus
21	chr9:116040600-116056800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:116040800-116056800	Strong transcription	Primary hematopoietic stem cells	blood
23	chr9:116040800-116056800	Strong transcription	Fetal Muscle Leg	muscle
24	chr9:116040800-116057400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:116040800-116057400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:116041000-116056600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:116041000-116056800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:116041200-116056600	Strong transcription	Fetal Brain Female	brain
29	chr9:116041600-116056600	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr9:116041800-116056600	Strong transcription	Primary T cells from cord blood	blood
31	chr9:116042000-116056600	Strong transcription	Brain Angular Gyrus	brain
32	chr9:116042000-116056800	Strong transcription	GM12878-XiMat	blood
33	chr9:116050000-116062000	Weak transcription	Stomach Mucosa	stomach
34	chr9:116052000-116056600	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr9:116052600-116056600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:116054000-116057200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:116054200-116057600	Weak transcription	Fetal Brain Male	brain
38	chr9:116054200-116065000	Weak transcription	Fetal Kidney	kidney
39	chr9:116054600-116065200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr9:116054800-116056600	Weak transcription	Colon Smooth Muscle	Colon
41	chr9:116054800-116057000	Weak transcription	Psoas Muscle	Psoas
42	chr9:116054800-116057400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:116054800-116057400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:116054800-116057800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:116054800-116058000	Weak transcription	Lung	lung
46	chr9:116054800-116058400	Weak transcription	Ovary	ovary
47	chr9:116054800-116058600	Weak transcription	HSMMtube	muscle
48	chr9:116054800-116059600	Weak transcription	Small Intestine	intestine
49	chr9:116054800-116060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:116054800-116062200	Weak transcription	Colonic Mucosa	Colon

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