Variant report

Variant	rs73540341
Chromosome Location	chr13:93912080-93912081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93911742..93916096-chr13:93916981..93919803,4	K562	blood:
2	chr13:93911697..93914279-chr9:134147732..134150706,2	K562	blood:
3	chr13:93904272..93906855-chr13:93911609..93913523,2	K562	blood:
4	chr13:93910173..93912256-chr13:93913262..93915945,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs60253448	1.00[AMR][1000 genomes]
rs73540354	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554228	1.00[AMR][1000 genomes]
rs73628654	1.00[AMR][1000 genomes]
rs73628694	1.00[AMR][1000 genomes]
rs73628695	1.00[AMR][1000 genomes]
rs74108506	1.00[AMR][1000 genomes]
rs74108508	1.00[AMR][1000 genomes]
rs74108509	1.00[AMR][1000 genomes]
rs7986020	1.00[AMR][1000 genomes]
rs8001040	1.00[AMR][1000 genomes]
rs9584109	1.00[AMR][1000 genomes]
rs9589718	1.00[AMR][1000 genomes]
rs9589719	1.00[AMR][1000 genomes]
rs9589723	1.00[AMR][1000 genomes]
rs9589725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93897200-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:93901400-93923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:93902400-93913000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:93902400-93914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:93902800-93912200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:93902800-93912400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:93902800-93912800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:93903000-93922800	Weak transcription	Fetal Stomach	stomach
9	chr13:93903000-93923000	Weak transcription	Fetal Intestine Small	intestine
10	chr13:93904800-93915000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:93910800-93912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr13:93910800-93913000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:93910800-93913000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:93910800-93913200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:93910800-93920600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr13:93910800-93920800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:93911000-93912800	Weak transcription	Liver	Liver
18	chr13:93911200-93922200	Weak transcription	HepG2	liver
19	chr13:93911600-93915000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr13:93911600-93917200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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