Variant report

Variant	rs73628695
Chromosome Location	chr13:93803842-93803843
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60253448	1.00[AMR][1000 genomes]
rs73540341	1.00[AMR][1000 genomes]
rs73540354	1.00[AMR][1000 genomes]
rs73554228	1.00[AMR][1000 genomes]
rs73628654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73628694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73633698	1.00[AMR][1000 genomes]
rs7986020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8001040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832682	chr13:93700861-93874801	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900912	chr13:93800114-93853929	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93802200-93804800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:93802400-93804400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:93802800-93804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:93802800-93804600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:93803000-93804000	Enhancers	HMEC	breast
6	chr13:93803000-93804400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:93803000-93804600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:93803000-93804800	Enhancers	Osteobl	bone
9	chr13:93803200-93804000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:93803200-93804400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:93803200-93804400	Enhancers	NH-A	brain
12	chr13:93803400-93804000	Enhancers	HSMM	muscle
13	chr13:93803400-93804000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr13:93803600-93804400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links