Variant report

Variant	rs73540997
Chromosome Location	chr11:105739924-105739925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7117997	1.00[AFR][1000 genomes]
rs73542809	1.00[AFR][1000 genomes]
rs73542823	1.00[AFR][1000 genomes]
rs73542902	1.00[AFR][1000 genomes]
rs73552657	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105738000-105740600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105738200-105745400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:105738400-105744200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:105738600-105740000	Enhancers	Brain Substantia Nigra	brain
6	chr11:105738600-105740400	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:105738800-105740400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:105739200-105741400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:105739400-105740200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:105739400-105742600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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