Variant report

Variant	rs73542902
Chromosome Location	chr11:105781334-105781335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7117997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540997	1.00[AFR][1000 genomes]
rs73542809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73542823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552657	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105771400-105785600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105774200-105784400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:105774200-105785600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:105778400-105785600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:105780400-105791400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:105780600-105781400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:105780600-105781600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:105780800-105781400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:105780800-105781400	Enhancers	HUVEC	blood vessel
10	chr11:105780800-105781400	Enhancers	NH-A	brain
11	chr11:105780800-105781600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:105780800-105781600	Enhancers	HMEC	breast
13	chr11:105781000-105781400	Enhancers	Hela-S3	cervix
14	chr11:105781000-105781800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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