Variant report

Variant	rs73541000
Chromosome Location	chr6:131859375-131859376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10223604	1.00[EUR][1000 genomes]
rs28665660	1.00[EUR][1000 genomes]
rs57085187	1.00[EUR][1000 genomes]
rs60195876	1.00[EUR][1000 genomes]
rs6918605	1.00[EUR][1000 genomes]
rs6919383	1.00[EUR][1000 genomes]
rs6928751	0.83[EUR][1000 genomes]
rs73540973	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73542807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554216	1.00[EUR][1000 genomes]
rs73554219	1.00[EUR][1000 genomes]
rs73630127	1.00[EUR][1000 genomes]
rs9321300	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483288	1.00[EUR][1000 genomes]
rs9483292	1.00[EUR][1000 genomes]
rs9483300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492991	1.00[EUR][1000 genomes]
rs9493014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886667	chr6:131807510-131876943	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131856400-131859600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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