Variant report

Variant	rs73541179
Chromosome Location	chr11:72421282-72421283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72411342..72413114-chr11:72420679..72423374,2	MCF-7	breast:
2	chr11:72419217..72421589-chr11:72432521..72435426,2	K562	blood:

Variant related genes	Relation type
ENSG00000186635	Chromatin interaction
ENSG00000245148	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1056864	1.00[AMR][1000 genomes]
rs10751207	1.00[AMR][1000 genomes]
rs1299161	1.00[AMR][1000 genomes]
rs366711	1.00[AMR][1000 genomes]
rs371903	1.00[AMR][1000 genomes]
rs379276	1.00[AMR][1000 genomes]
rs379638	1.00[AMR][1000 genomes]
rs390130	1.00[AMR][1000 genomes]
rs392818	1.00[AMR][1000 genomes]
rs408269	1.00[AMR][1000 genomes]
rs414178	1.00[AMR][1000 genomes]
rs424234	1.00[AMR][1000 genomes]
rs452228	1.00[AMR][1000 genomes]
rs55816648	1.00[AMR][1000 genomes]
rs56251316	1.00[AMR][1000 genomes]
rs57512065	1.00[AMR][1000 genomes]
rs577536	1.00[AMR][1000 genomes]
rs58744558	1.00[AMR][1000 genomes]
rs59222962	1.00[AMR][1000 genomes]
rs59414438	1.00[AMR][1000 genomes]
rs61417743	1.00[AMR][1000 genomes]
rs633405	1.00[AMR][1000 genomes]
rs644698	1.00[AMR][1000 genomes]
rs7108477	1.00[AMR][1000 genomes]
rs7110834	1.00[AMR][1000 genomes]
rs73529620	1.00[AMR][1000 genomes]
rs73529662	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73529668	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73529672	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541198	1.00[AMR][1000 genomes]
rs73542594	1.00[AMR][1000 genomes]
rs73543236	1.00[AMR][1000 genomes]
rs73543237	1.00[AMR][1000 genomes]
rs73543245	1.00[AMR][1000 genomes]
rs73543251	1.00[AMR][1000 genomes]
rs73544388	1.00[AMR][1000 genomes]
rs73544400	1.00[AMR][1000 genomes]
rs73546206	1.00[AMR][1000 genomes]
rs73546230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv555408	chr11:72405223-72441431	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv555409	chr11:72405450-72423385	Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv468636	chr11:72405868-72431679	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv555410	chr11:72405868-72431679	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72393800-72423200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:72394000-72426800	Strong transcription	Thymus	Thymus
3	chr11:72394200-72423600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:72394200-72425800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:72394200-72429000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:72394400-72423200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:72394400-72423800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr11:72394400-72424400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:72394600-72428800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:72394600-72429400	Strong transcription	Primary T cells from cord blood	blood
11	chr11:72394600-72430200	Strong transcription	Dnd41	blood
12	chr11:72395000-72423800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr11:72395000-72429800	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:72395200-72425600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:72395200-72429000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:72396000-72425600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:72396000-72426000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr11:72396200-72423200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:72396400-72425400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:72397000-72423400	Strong transcription	Primary B cells from cord blood	blood
21	chr11:72397800-72425200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:72397800-72426000	Strong transcription	Fetal Thymus	thymus
23	chr11:72398000-72425200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr11:72398600-72423800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:72398600-72424400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:72398600-72426000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:72398800-72423600	Weak transcription	Right Atrium	heart
28	chr11:72398800-72425200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:72401000-72423600	Strong transcription	Liver	Liver
30	chr11:72404200-72423600	Weak transcription	Fetal Brain Male	brain
31	chr11:72405000-72429600	Weak transcription	Psoas Muscle	Psoas
32	chr11:72406400-72426200	Strong transcription	Pancreas	Pancrea
33	chr11:72409000-72432600	Strong transcription	HepG2	liver
34	chr11:72412200-72424000	Strong transcription	NHEK	skin
35	chr11:72412800-72422400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:72413600-72423800	Strong transcription	Gastric	stomach
37	chr11:72413600-72426600	Strong transcription	GM12878-XiMat	blood
38	chr11:72413800-72430600	Weak transcription	Small Intestine	intestine
39	chr11:72414000-72425600	Strong transcription	Esophagus	oesophagus
40	chr11:72414200-72423200	Strong transcription	Lung	lung
41	chr11:72414200-72424000	Strong transcription	Colonic Mucosa	Colon
42	chr11:72414400-72423800	Strong transcription	Fetal Intestine Small	intestine
43	chr11:72414800-72422600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr11:72415000-72422800	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr11:72415000-72423200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:72415000-72423400	Strong transcription	Rectal Smooth Muscle	rectum
47	chr11:72415000-72423600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:72415000-72426200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:72415200-72421800	Weak transcription	NH-A	brain
50	chr11:72415200-72422200	Strong transcription	Brain Anterior Caudate	brain

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