Variant report

Variant	rs73541198
Chromosome Location	chr11:72437114-72437115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:72435648-72437196	SK-N-SH	brain:	n/a	chr11:72436435-72436453 chr11:72436440-72436448 chr11:72436990-72437008 chr11:72436436-72436452 chr11:72436993-72437006 chr11:72436437-72436458

No.	Distal block	Cell Line	Cell type
1	chr11:72435321..72438688-chr11:72524163..72527282,5	K562	blood:
2	chr11:72432212..72438079-chr11:72503579..72507160,8	MCF-7	breast:
3	chr11:72436376..72437908-chr11:72502804..72504978,2	K562	blood:
4	chr11:72431813..72439722-chr11:72491472..72498611,14	MCF-7	breast:
5	chr11:72434436..72438940-chr11:72523674..72527576,8	MCF-7	breast:
6	chr11:72422674..72429269-chr11:72431829..72438308,7	K562	blood:
7	chr11:72436061..72437765-chr11:72524365..72526248,2	MCF-7	breast:
8	chr11:72436684..72437498-chr11:72504593..72505170,2	K562	blood:
9	chr11:72435741..72437249-chr11:72504058..72505389,13	MCF-7	breast:

Variant related genes	Relation type
ARAP1	TF binding region
ENSG00000265064	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000186635	Chromatin interaction
ENSG00000168010	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1056864	1.00[AMR][1000 genomes]
rs10751207	1.00[AMR][1000 genomes]
rs1299161	1.00[AMR][1000 genomes]
rs366711	1.00[AMR][1000 genomes]
rs371903	1.00[AMR][1000 genomes]
rs379276	1.00[AMR][1000 genomes]
rs379638	1.00[AMR][1000 genomes]
rs390130	1.00[AMR][1000 genomes]
rs392818	1.00[AMR][1000 genomes]
rs408269	1.00[AMR][1000 genomes]
rs414178	1.00[AMR][1000 genomes]
rs424234	1.00[AMR][1000 genomes]
rs452228	1.00[AMR][1000 genomes]
rs55816648	1.00[AMR][1000 genomes]
rs56251316	1.00[AMR][1000 genomes]
rs57512065	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577536	1.00[AMR][1000 genomes]
rs58744558	1.00[AMR][1000 genomes]
rs59222962	1.00[AMR][1000 genomes]
rs59414438	1.00[AMR][1000 genomes]
rs61417743	1.00[AMR][1000 genomes]
rs633405	1.00[AMR][1000 genomes]
rs644698	1.00[AMR][1000 genomes]
rs7108477	1.00[AMR][1000 genomes]
rs7110834	1.00[AMR][1000 genomes]
rs73529620	1.00[AMR][1000 genomes]
rs73529662	1.00[AMR][1000 genomes]
rs73529668	1.00[AMR][1000 genomes]
rs73529672	1.00[AMR][1000 genomes]
rs73541179	1.00[AMR][1000 genomes]
rs73542594	1.00[AMR][1000 genomes]
rs73543236	1.00[AMR][1000 genomes]
rs73543237	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543245	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543251	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544388	1.00[AMR][1000 genomes]
rs73544400	1.00[AMR][1000 genomes]
rs73546206	1.00[AMR][1000 genomes]
rs73546230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv555408	chr11:72405223-72441431	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72418000-72441000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:72424600-72441200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:72433000-72439000	Strong transcription	HepG2	liver
4	chr11:72433400-72437400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:72433600-72446000	Genic enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:72433600-72447800	Weak transcription	Aorta	Aorta
7	chr11:72433600-72452400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:72434000-72437400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:72434000-72437400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:72434000-72437400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:72434000-72438400	Weak transcription	NHDF-Ad	bronchial
12	chr11:72434000-72438600	Weak transcription	Osteobl	bone
13	chr11:72434000-72446600	Weak transcription	NH-A	brain
14	chr11:72434000-72446800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:72434000-72452200	Weak transcription	Small Intestine	intestine
16	chr11:72434200-72437200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:72434200-72438600	Weak transcription	Right Atrium	heart
18	chr11:72434200-72439400	Genic enhancers	Primary B cells from cord blood	blood
19	chr11:72434200-72446200	Weak transcription	Left Ventricle	heart
20	chr11:72434200-72446800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:72434200-72447600	Weak transcription	Right Ventricle	heart
22	chr11:72434200-72448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:72434600-72437200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:72434600-72437400	Genic enhancers	Spleen	Spleen
25	chr11:72434600-72438800	Strong transcription	Dnd41	blood
26	chr11:72434600-72447600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:72434800-72439400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:72434800-72440200	Weak transcription	HSMM	muscle
29	chr11:72435000-72446800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:72435200-72437400	Weak transcription	Gastric	stomach
31	chr11:72435200-72439000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:72435400-72437600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:72435400-72438000	Weak transcription	Esophagus	oesophagus
34	chr11:72435400-72438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:72435400-72439400	Enhancers	Brain Substantia Nigra	brain
36	chr11:72435600-72437200	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:72435600-72441800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:72435600-72446800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:72435600-72449600	Weak transcription	Pancreas	Pancrea
40	chr11:72436000-72437200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:72436000-72437400	Enhancers	Fetal Muscle Leg	muscle
42	chr11:72436000-72438600	Enhancers	Fetal Muscle Trunk	muscle
43	chr11:72436000-72441000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:72436000-72441000	Weak transcription	Primary T cells from cord blood	blood
45	chr11:72436200-72437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:72436200-72446600	Weak transcription	NHLF	lung
47	chr11:72436400-72437400	Enhancers	Fetal Brain Male	brain
48	chr11:72436400-72437600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr11:72436400-72438800	Strong transcription	Thymus	Thymus
50	chr11:72436400-72439000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links