Variant report

Variant	rs73543829
Chromosome Location	chr15:92938826-92938827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92937393..92940056-chr15:92940490..92942465,3	K562	blood:
2	chr15:92938506..92940378-chr15:92942653..92944653,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56191645	1.00[EUR][1000 genomes]
rs60284643	1.00[EUR][1000 genomes]
rs60795899	1.00[EUR][1000 genomes]
rs74029004	1.00[EUR][1000 genomes]
rs74029005	1.00[EUR][1000 genomes]
rs74029008	1.00[EUR][1000 genomes]
rs74029009	1.00[EUR][1000 genomes]
rs74029011	1.00[EUR][1000 genomes]
rs74029012	1.00[EUR][1000 genomes]
rs74029013	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv3393959	chr15:92935948-92939196	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92936200-92939400	Active TSS	HSMM	muscle
2	chr15:92936400-92939200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:92936600-92939400	Active TSS	HSMMtube	muscle
4	chr15:92936800-92939200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:92937400-92939000	Bivalent Enhancer	HUVEC	blood vessel
6	chr15:92938400-92939000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
7	chr15:92938400-92939000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
8	chr15:92938400-92939200	Flanking Active TSS	NH-A	brain
9	chr15:92938400-92939400	Weak transcription	Right Atrium	heart
10	chr15:92938400-92942400	Weak transcription	Left Ventricle	heart
11	chr15:92938600-92939000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:92938600-92939000	Enhancers	Fetal Heart	heart
13	chr15:92938600-92939000	Bivalent Enhancer	Fetal Kidney	kidney
14	chr15:92938600-92939000	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr15:92938600-92939200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
16	chr15:92938600-92939200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
17	chr15:92938600-92939400	Bivalent Enhancer	Fetal Stomach	stomach
18	chr15:92938600-92939600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr15:92938600-92939600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr15:92938800-92939000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
21	chr15:92938800-92939000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
22	chr15:92938800-92939000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:92938800-92939000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
24	chr15:92938800-92939000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr15:92938800-92939000	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:92938800-92939000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:92938800-92939000	Active TSS	Brain Germinal Matrix	brain
28	chr15:92938800-92939000	Flanking Active TSS	Fetal Brain Male	brain
29	chr15:92938800-92939000	Bivalent/Poised TSS	Fetal Thymus	thymus
30	chr15:92938800-92939000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
31	chr15:92938800-92939200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:92938800-92939200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:92938800-92939400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:92938800-92939400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:92938800-92939600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:92938800-92939800	Flanking Active TSS	Fetal Brain Female	brain
37	chr15:92938800-92940000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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