Variant report

Variant	rs74029012
Chromosome Location	chr15:92935120-92935121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:137)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:137 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:92934950-92935168	HUVEC	blood vessel:	n/a	n/a
2	CTCF	chr15:92934929-92935190	MCF-7	breast:	n/a	n/a
3	CTCF	chr15:92934789-92935362	MCF-7	breast:	n/a	n/a
4	CTCF	chr15:92934712-92935310	A549	lung:	n/a	n/a
5	CTCF	chr15:92934957-92935184	GM19238	blood:	n/a	n/a
6	JUND	chr15:92934979-92935144	K562	blood:	n/a	n/a
7	YY1	chr15:92934974-92935152	HCT-116	colon:	n/a	n/a
8	CTCF	chr15:92934847-92935257	HepG2	liver:	n/a	n/a
9	CTCF	chr15:92934936-92935203	NHEK	skin:	n/a	n/a
10	CTCF	chr15:92934980-92935130	HMF	breast:	n/a	n/a
11	ZNF143	chr15:92934904-92935218	GM12878	blood:	n/a	n/a
12	CTCF	chr15:92934974-92935145	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr15:92934980-92935130	GM12875	blood:	n/a	n/a
14	ZNF143	chr15:92934898-92935239	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr15:92935000-92935150	HFF	foreskin:	n/a	n/a
16	RAD21	chr15:92934805-92935240	ECC-1	luminal epithelium:	n/a	n/a
17	CTCF	chr15:92934972-92935123	GM10266	blood:	n/a	n/a
18	SMC3	chr15:92934864-92935254	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr15:92934980-92935130	HMEC	breast:	n/a	n/a
20	CTCF	chr15:92934859-92935190	K562	blood:	n/a	n/a
21	CTCF	chr15:92934980-92935130	HVMF	connective:	n/a	n/a
22	CTCF	chr15:92934980-92935130	HCM	heart:	n/a	n/a
23	CTCF	chr15:92934939-92935378	HCT-116	colon:	n/a	n/a
24	CTCF	chr15:92934915-92935187	Gliobla	brain:	n/a	n/a
25	RAD21	chr15:92934899-92935192	A549	lung:	n/a	n/a
26	CTCF	chr15:92935000-92935150	HBMEC	blood vessel:	n/a	n/a
27	CTCF	chr15:92935000-92935150	HEEpiC	esophagus:	n/a	n/a
28	RAD21	chr15:92934849-92935198	HepG2	liver:	n/a	n/a
29	RAD21	chr15:92934773-92935345	MCF-7	breast:	n/a	n/a
30	CTCF	chr15:92934846-92935230	GM12878	blood:	n/a	n/a
31	CTCF	chr15:92934919-92935182	LNCaP	prostate:	n/a	n/a
32	CTCF	chr15:92934980-92935130	GM12864	blood:	n/a	n/a
33	CTCF	chr15:92934980-92935130	HPAF	blood vessel:	n/a	n/a
34	RAD21	chr15:92934950-92935133	K562	blood:	n/a	n/a
35	CTCF	chr15:92934980-92935130	HEK293	kidney:	n/a	n/a
36	CTCF	chr15:92934951-92935181	Fibrobl	skin:	n/a	n/a
37	CTCF	chr15:92935000-92935150	GM12870	blood:	n/a	n/a
38	CTCF	chr15:92934980-92935130	GM12867	blood:	n/a	n/a
39	CTCF	chr15:92934980-92935130	HL-60	blood:	n/a	n/a
40	CTCF	chr15:92934979-92935158	GM12891	blood:	n/a	n/a
41	CTCF	chr15:92934980-92935130	GM12868	blood:	n/a	n/a
42	CTCF	chr15:92934980-92935130	AG10803	skin:	n/a	n/a
43	CTCF	chr15:92934980-92935130	NB4	blood:	n/a	n/a
44	CTCF	chr15:92934980-92935130	HepG2	liver:	n/a	n/a
45	RAD21	chr15:92934772-92935230	A549	lung:	n/a	n/a
46	SMC3	chr15:92934946-92935208	HepG2	liver:	n/a	n/a
47	RAD21	chr15:92934838-92935218	SK-N-SH_RA	brain:	n/a	n/a
48	RAD21	chr15:92934739-92935361	HCT-116	colon:	n/a	n/a
49	RAD21	chr15:92934781-92935286	H1-hESC	embryonic stem cell:	n/a	n/a
50	ZNF143	chr15:92934997-92935203	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:92934225..92935135-chr15:93045700..93046211,2	MCF-7	breast:
2	chr15:92934619..92935225-chr15:92968908..92969697,2	MCF-7	breast:
3	chr15:92927559..92930317-chr15:92934349..92936037,2	MCF-7	breast:

No data

Variant related genes	Relation type
ST8SIA2	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56191645	1.00[EUR][1000 genomes]
rs60284643	1.00[EUR][1000 genomes]
rs60795899	1.00[EUR][1000 genomes]
rs6496930	0.81[AFR][1000 genomes]
rs73543829	1.00[EUR][1000 genomes]
rs74029004	1.00[EUR][1000 genomes]
rs74029005	1.00[EUR][1000 genomes]
rs74029008	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029009	1.00[EUR][1000 genomes]
rs74029011	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029013	1.00[EUR][1000 genomes]
rs8040217	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv869844	chr15:92881526-92935448	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92932600-92935600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:92932800-92935400	Weak transcription	Brain Germinal Matrix	brain
3	chr15:92934000-92935400	Weak transcription	Fetal Brain Female	brain
4	chr15:92934800-92935200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr15:92935000-92935200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
6	chr15:92935000-92935400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr15:92935000-92935600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr15:92935000-92936400	Enhancers	Fetal Brain Male	brain

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