Variant report

Variant	rs73545062
Chromosome Location	chr11:108234169-108234170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4987910	0.89[AFR][1000 genomes]
rs4987935	1.00[AFR][1000 genomes]
rs4987967	1.00[AFR][1000 genomes]
rs4987998	1.00[AFR][1000 genomes]
rs4988079	1.00[AFR][1000 genomes]
rs4988107	1.00[AFR][1000 genomes]
rs55894628	1.00[AFR][1000 genomes]
rs55987601	1.00[AFR][1000 genomes]
rs57464493	0.89[AFR][1000 genomes]
rs58745314	0.89[AFR][1000 genomes]
rs61338316	1.00[AFR][1000 genomes]
rs7108824	0.89[AFR][1000 genomes]
rs73545024	1.00[AFR][1000 genomes]
rs73545037	1.00[AFR][1000 genomes]
rs73545093	0.89[AFR][1000 genomes]
rs73561573	0.89[AFR][1000 genomes]
rs73561577	0.89[AFR][1000 genomes]
rs73561578	0.89[AFR][1000 genomes]
rs73561585	0.89[AFR][1000 genomes]
rs73561587	0.89[AFR][1000 genomes]
rs7949145	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108145800-108235400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:108212000-108236000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:108212000-108236600	Weak transcription	Stomach Mucosa	stomach
5	chr11:108212200-108241400	Weak transcription	Hela-S3	cervix
6	chr11:108212800-108238000	Weak transcription	HMEC	breast
7	chr11:108220200-108237000	Weak transcription	A549	lung
8	chr11:108222800-108235600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:108222800-108242200	Weak transcription	Fetal Intestine Small	intestine
10	chr11:108224200-108239200	Weak transcription	Small Intestine	intestine
11	chr11:108225400-108243200	Weak transcription	Fetal Heart	heart
12	chr11:108226000-108240200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:108226400-108235400	Weak transcription	HepG2	liver
14	chr11:108226400-108235600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:108226400-108235600	Weak transcription	Spleen	Spleen
16	chr11:108226400-108235800	Weak transcription	HSMM	muscle
17	chr11:108226400-108236200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:108226400-108241400	Weak transcription	Thymus	Thymus
19	chr11:108226400-108244200	Weak transcription	Psoas Muscle	Psoas
20	chr11:108226400-108244600	Weak transcription	Gastric	stomach
21	chr11:108226600-108235400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:108226600-108235600	Weak transcription	HSMMtube	muscle
23	chr11:108226600-108242000	Weak transcription	Lung	lung
24	chr11:108226600-108257400	Weak transcription	Right Ventricle	heart
25	chr11:108226800-108234200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:108226800-108235400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:108226800-108235600	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:108226800-108235600	Weak transcription	Fetal Lung	lung
29	chr11:108226800-108236800	Weak transcription	Colonic Mucosa	Colon
30	chr11:108226800-108237200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:108226800-108239000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:108226800-108239000	Weak transcription	Esophagus	oesophagus
33	chr11:108226800-108241400	Weak transcription	Aorta	Aorta
34	chr11:108226800-108241400	Weak transcription	NHEK	skin
35	chr11:108226800-108242800	Weak transcription	Placenta	Placenta
36	chr11:108226800-108243400	Weak transcription	Fetal Brain Male	brain
37	chr11:108227000-108235400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:108227000-108235600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:108227000-108235800	Weak transcription	Brain Anterior Caudate	brain
40	chr11:108227000-108238600	Weak transcription	Brain Substantia Nigra	brain
41	chr11:108227000-108239200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:108227000-108239400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:108227200-108240800	Weak transcription	Pancreas	Pancrea
44	chr11:108227200-108241400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:108227600-108234800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:108227600-108235400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:108227600-108235400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:108227600-108237800	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:108227600-108240400	Weak transcription	GM12878-XiMat	blood
50	chr11:108227600-108243200	Weak transcription	NH-A	brain

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