Variant report

Variant	rs73561577
Chromosome Location	chr11:108102966-108102967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108099276..108102016-chr11:108102518..108104211,2	K562	blood:
2	chr11:108090058..108092133-chr11:108101877..108104641,2	K562	blood:

Variant related genes	Relation type
ENSG00000206967	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs35783388	0.89[AFR][1000 genomes]
rs4987910	1.00[AFR][1000 genomes]
rs4987935	0.89[AFR][1000 genomes]
rs4987967	0.89[AFR][1000 genomes]
rs4987998	0.89[AFR][1000 genomes]
rs4988079	0.89[AFR][1000 genomes]
rs4988107	0.89[AFR][1000 genomes]
rs55894628	0.89[AFR][1000 genomes]
rs55987601	0.89[AFR][1000 genomes]
rs58745314	1.00[AFR][1000 genomes]
rs58989781	0.86[AFR][1000 genomes]
rs59820082	0.85[AFR][1000 genomes]
rs61338316	0.89[AFR][1000 genomes]
rs7108824	1.00[AFR][1000 genomes]
rs73545024	0.89[AFR][1000 genomes]
rs73545037	0.89[AFR][1000 genomes]
rs73545062	0.89[AFR][1000 genomes]
rs73561573	1.00[AFR][1000 genomes]
rs73561578	1.00[AFR][1000 genomes]
rs73561585	1.00[AFR][1000 genomes]
rs73561587	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv556431	chr11:108098142-108115587	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv556432	chr11:108098563-108115539	Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
4	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
6	chr11:108095200-108106800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:108095400-108103800	Weak transcription	Right Ventricle	heart
8	chr11:108095400-108119800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:108095800-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:108095800-108122400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:108096000-108107800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
13	chr11:108096200-108106600	Weak transcription	A549	lung
14	chr11:108096400-108107800	Weak transcription	Psoas Muscle	Psoas
15	chr11:108096400-108156400	Weak transcription	NHLF	lung
16	chr11:108096600-108107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:108096600-108107800	Weak transcription	Fetal Brain Male	brain
18	chr11:108096600-108108600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:108096600-108121400	Weak transcription	Spleen	Spleen
20	chr11:108096600-108128400	Weak transcription	Pancreas	Pancrea
21	chr11:108097000-108103200	Strong transcription	HSMM	muscle
22	chr11:108097000-108129200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:108097200-108103600	Weak transcription	Stomach Mucosa	stomach
24	chr11:108097200-108105600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:108097800-108103200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:108097800-108107000	Weak transcription	Thymus	Thymus
27	chr11:108097800-108112000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:108098000-108104200	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr11:108098000-108104800	Strong transcription	Dnd41	blood
30	chr11:108098000-108106000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr11:108098200-108104200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:108098200-108104400	Strong transcription	Osteobl	bone
33	chr11:108098200-108104800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr11:108098200-108108600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:108098200-108108800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:108098200-108112400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:108098400-108104000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:108098400-108104200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:108098400-108104200	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:108098400-108108600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:108098400-108122400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:108098400-108131600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:108098600-108104200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:108098800-108103200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:108098800-108104200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:108098800-108104400	Strong transcription	Fetal Thymus	thymus
47	chr11:108098800-108108800	Strong transcription	Liver	Liver
48	chr11:108099000-108103200	Strong transcription	NH-A	brain
49	chr11:108099000-108104200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr11:108099000-108104400	Strong transcription	Placenta	Placenta

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