Variant report

Variant	rs73545567
Chromosome Location	chr13:94378994-94378995
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11840361	1.00[EUR][1000 genomes]
rs1411508	1.00[EUR][1000 genomes]
rs1927689	1.00[EUR][1000 genomes]
rs35684567	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73543578	1.00[EUR][1000 genomes]
rs9584134	1.00[EUR][1000 genomes]
rs9589775	1.00[EUR][1000 genomes]
rs9589776	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039305	chr13:94229672-94398382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv562753	chr13:94283764-94402110	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933758	chr13:94299302-94421378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916694	chr13:94360053-94423063	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94376000-94379200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:94376000-94380000	Weak transcription	Liver	Liver
3	chr13:94376200-94379200	Weak transcription	Osteobl	bone
4	chr13:94377600-94379000	Enhancers	Colon Smooth Muscle	Colon
5	chr13:94377800-94380200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:94378000-94379200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:94378400-94379000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:94378400-94379200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:94378400-94379200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:94378400-94379200	Enhancers	Ovary	ovary
11	chr13:94378400-94380400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:94378400-94380400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:94378600-94379000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:94378600-94380200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:94378600-94380800	Enhancers	HepG2	liver
16	chr13:94378800-94379000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:94378800-94379000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:94378800-94379600	Weak transcription	Fetal Heart	heart
19	chr13:94378800-94379800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr13:94378800-94380600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:94378800-94380600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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