Variant report

Variant	rs73546619
Chromosome Location	chr13:95227969-95227970
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95226835..95228844-chr13:95230634..95232226,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73548528	1.00[EUR][1000 genomes]
rs73550454	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95215000-95235400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:95218400-95232800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:95219200-95238200	Strong transcription	Primary T cells from cord blood	blood
4	chr13:95219600-95237000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:95219600-95245600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:95220800-95229200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:95220800-95231000	Strong transcription	Liver	Liver
8	chr13:95220800-95237000	Strong transcription	GM12878-XiMat	blood
9	chr13:95220800-95237600	Strong transcription	Fetal Intestine Large	intestine
10	chr13:95221000-95237000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:95221000-95238000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr13:95221000-95240000	Strong transcription	Fetal Thymus	thymus
13	chr13:95221000-95241000	Strong transcription	Dnd41	blood
14	chr13:95221200-95235600	Strong transcription	Adipose Nuclei	Adipose
15	chr13:95221200-95236600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr13:95221200-95237400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr13:95221200-95238000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:95221200-95239200	Weak transcription	Brain Germinal Matrix	brain
19	chr13:95221400-95228000	Strong transcription	Fetal Muscle Leg	muscle
20	chr13:95221400-95235400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:95221400-95237400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:95221400-95242800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr13:95221400-95245800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr13:95221600-95240000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr13:95221800-95228600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:95221800-95237000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:95221800-95239800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:95221800-95241200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr13:95222000-95228000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:95222000-95230200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr13:95222000-95236000	Strong transcription	HMEC	breast
32	chr13:95222000-95237400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr13:95222000-95238200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr13:95222000-95240000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr13:95222000-95245000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr13:95222000-95247200	Weak transcription	Fetal Brain Male	brain
37	chr13:95222200-95229200	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr13:95222200-95229200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr13:95222200-95235000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:95222200-95237400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr13:95222200-95239200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr13:95222200-95245000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr13:95222200-95245200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr13:95222400-95229600	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr13:95222400-95229800	Strong transcription	Fetal Lung	lung
46	chr13:95222400-95230000	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr13:95222400-95237000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr13:95222400-95237000	Strong transcription	NH-A	brain
49	chr13:95222400-95237000	Strong transcription	Osteobl	bone
50	chr13:95222400-95237200	Strong transcription	HUES48 Cell Line	embryonic stem cell

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