Variant report

Variant	rs73548528
Chromosome Location	chr13:95315433-95315434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73546619	1.00[EUR][1000 genomes]
rs73550454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590093	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95310000-95318000	Weak transcription	NHEK	skin
2	chr13:95312400-95315600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:95312600-95317800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:95313400-95317400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:95314600-95315600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr13:95314600-95316200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:95314800-95315600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:95314800-95316600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:95314800-95319200	Weak transcription	Brain Hippocampus Middle	brain
10	chr13:95315200-95315600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr13:95315200-95315600	Flanking Active TSS	K562	blood
12	chr13:95315200-95316000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:95315200-95316200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr13:95315200-95316400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr13:95315200-95318800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:95315400-95315600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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