Variant report

Variant	rs9590093
Chromosome Location	chr13:95477299-95477300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1925853	1.00[EUR][1000 genomes]
rs1925867	1.00[EUR][1000 genomes]
rs1925869	1.00[EUR][1000 genomes]
rs1925873	1.00[EUR][1000 genomes]
rs1925881	1.00[EUR][1000 genomes]
rs1925882	1.00[EUR][1000 genomes]
rs4396407	1.00[EUR][1000 genomes]
rs4773835	1.00[EUR][1000 genomes]
rs55770575	1.00[EUR][1000 genomes]
rs6492756	1.00[EUR][1000 genomes]
rs7336236	1.00[EUR][1000 genomes]
rs73548528	1.00[EUR][1000 genomes]
rs73550454	1.00[EUR][1000 genomes]
rs7981129	1.00[EUR][1000 genomes]
rs7981212	1.00[EUR][1000 genomes]
rs7994227	1.00[EUR][1000 genomes]
rs7999651	1.00[EUR][1000 genomes]
rs9302034	1.00[EUR][1000 genomes]
rs9561755	1.00[EUR][1000 genomes]
rs9561756	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832687	chr13:95412811-95582161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95475600-95477400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:95475800-95477600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:95476200-95477600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:95476600-95477400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:95476800-95477600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:95476800-95479200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:95476800-95480600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:95477000-95477600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:95477000-95478000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:95477000-95478000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:95477000-95478400	Enhancers	Fetal Lung	lung
12	chr13:95477000-95481800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:95477000-95482000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr13:95477200-95478800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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