Variant report

Variant	rs1925867
Chromosome Location	chr13:95640880-95640881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95640676..95641188-chr13:95808244..95809124,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11070104	1.00[AFR][1000 genomes]
rs1925853	1.00[EUR][1000 genomes]
rs1925869	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1925873	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1925881	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1925882	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3864995	1.00[EUR][1000 genomes]
rs4148555	1.00[EUR][1000 genomes]
rs4396407	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4773834	0.82[AFR][1000 genomes]
rs4773835	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4773837	1.00[EUR][1000 genomes]
rs55770575	1.00[EUR][1000 genomes]
rs59816567	1.00[EUR][1000 genomes]
rs60016022	1.00[EUR][1000 genomes]
rs6492756	1.00[EUR][1000 genomes]
rs66527659	1.00[EUR][1000 genomes]
rs7317438	1.00[EUR][1000 genomes]
rs7323876	1.00[EUR][1000 genomes]
rs7336236	1.00[EUR][1000 genomes]
rs73555558	1.00[EUR][1000 genomes]
rs74105410	1.00[EUR][1000 genomes]
rs74105411	1.00[EUR][1000 genomes]
rs74105413	1.00[EUR][1000 genomes]
rs74105424	1.00[EUR][1000 genomes]
rs74105432	1.00[EUR][1000 genomes]
rs74105434	1.00[EUR][1000 genomes]
rs7981129	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7981212	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7994227	1.00[EUR][1000 genomes]
rs7996205	1.00[EUR][1000 genomes]
rs7997626	0.82[AFR][1000 genomes]
rs7999651	1.00[EUR][1000 genomes]
rs9282570	1.00[EUR][1000 genomes]
rs9302034	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9524772	1.00[EUR][1000 genomes]
rs9561755	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9561756	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584278	1.00[EUR][1000 genomes]
rs9590093	1.00[EUR][1000 genomes]
rs9590176	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2761812	chr13:95639780-95643937	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95637600-95645200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:95638000-95644800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:95639400-95641000	Enhancers	Stomach Mucosa	stomach
4	chr13:95640800-95641000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:95640800-95641400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:95640800-95641400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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