Variant report

Variant	rs7997626
Chromosome Location	chr13:95620951-95620952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95619254..95622585-chr13:95624903..95627476,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR180-6	chr13:95620881-95621161	NONHSAT034746

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11070104	0.82[AFR][1000 genomes]
rs1925867	0.82[AFR][1000 genomes]
rs1925869	0.82[AFR][1000 genomes]
rs1925882	0.91[AFR][1000 genomes]
rs4396407	0.82[AFR][1000 genomes]
rs4773834	1.00[AFR][1000 genomes]
rs4773835	0.91[AFR][1000 genomes]
rs7981129	0.91[AFR][1000 genomes]
rs7981212	0.82[AFR][1000 genomes]
rs9302034	0.82[AFR][1000 genomes]
rs9561755	0.82[AFR][1000 genomes]
rs9561756	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv274954	chr13:95617339-95621812	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3405940	chr13:95618976-95621724	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95619400-95621000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95619400-95621200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:95619400-95621200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:95619400-95621200	Active TSS	A549	lung
5	chr13:95619600-95621000	Active TSS	H1 Cell Line	embryonic stem cell
6	chr13:95619600-95621000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:95619600-95621000	Bivalent Enhancer	Liver	Liver
8	chr13:95619600-95621000	Bivalent/Poised TSS	Psoas Muscle	Psoas
9	chr13:95619600-95621000	Bivalent/Poised TSS	Right Ventricle	heart
10	chr13:95619600-95621200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:95619600-95621200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr13:95619600-95621200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:95619600-95621200	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr13:95619600-95621200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr13:95619600-95621200	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr13:95619600-95621200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:95619600-95621200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr13:95619600-95621200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:95619600-95621200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:95619600-95621200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr13:95619600-95621200	Active TSS	Brain Substantia Nigra	brain
22	chr13:95619600-95621200	Bivalent Enhancer	Fetal Brain Male	brain
23	chr13:95619600-95621200	Bivalent/Poised TSS	HSMMtube	muscle
24	chr13:95619600-95621200	Bivalent/Poised TSS	NHEK	skin
25	chr13:95619600-95621400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:95619600-95621400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr13:95619600-95621400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
28	chr13:95619600-95621400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
29	chr13:95619800-95621000	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr13:95619800-95621000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr13:95619800-95621000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:95619800-95621000	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr13:95619800-95621000	Active TSS	Brain Angular Gyrus	brain
34	chr13:95619800-95621000	Bivalent/Poised TSS	Colonic Mucosa	Colon
35	chr13:95619800-95621000	Bivalent/Poised TSS	Fetal Brain Female	brain
36	chr13:95619800-95621000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
37	chr13:95619800-95621200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:95619800-95621200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr13:95619800-95621200	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr13:95619800-95621200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:95619800-95621200	Active TSS	Brain Cingulate Gyrus	brain
42	chr13:95619800-95621200	Bivalent/Poised TSS	Esophagus	oesophagus
43	chr13:95619800-95621200	Bivalent/Poised TSS	HSMM	muscle
44	chr13:95619800-95621400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr13:95620000-95621000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr13:95620000-95621000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr13:95620000-95621000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr13:95620000-95621000	Active TSS	Brain Anterior Caudate	brain
49	chr13:95620000-95621000	Active TSS	Gastric	stomach
50	chr13:95620000-95621200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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